PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37651-37700 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 84.6703 | 85.1351 | 84.2105 | 80.3618 | 63 | 11 | 64 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | SNP | * | HG002compoundhet | het | 84.6682 | 93.2007 | 77.5669 | 61.4559 | 13214 | 964 | 13447 | 3889 | 29 | 0.7457 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6682 | 96.2747 | 75.5590 | 61.4479 | 17186 | 665 | 17402 | 5629 | 124 | 2.2029 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | het | 84.6644 | 98.0974 | 74.4672 | 92.2745 | 1753 | 34 | 1747 | 599 | 12 | 2.0033 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6555 | 81.5055 | 88.0587 | 71.2392 | 1256 | 285 | 1261 | 171 | 87 | 50.8772 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 84.6512 | 77.7778 | 92.8571 | 70.8333 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 84.6473 | 75.0000 | 97.1429 | 97.2332 | 33 | 11 | 34 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6436 | 98.9102 | 73.9737 | 69.3624 | 35033 | 386 | 35409 | 12458 | 341 | 2.7372 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.6414 | 86.8827 | 82.5129 | 86.9736 | 1126 | 170 | 1123 | 238 | 154 | 64.7059 | |
| ckim-gatk | SNP | * | map_l125_m2_e0 | * | 84.6410 | 74.5907 | 97.8215 | 85.1222 | 34851 | 11872 | 34845 | 776 | 59 | 7.6031 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | * | 84.6397 | 74.3855 | 98.1731 | 83.5274 | 21821 | 7514 | 21817 | 406 | 44 | 10.8374 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | het | 84.6379 | 80.8799 | 88.7622 | 92.9498 | 478 | 113 | 545 | 69 | 16 | 23.1884 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.6348 | 77.0701 | 93.8462 | 62.2093 | 121 | 36 | 122 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 84.6329 | 76.2619 | 95.0680 | 66.4957 | 559 | 174 | 559 | 29 | 29 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | * | 84.6327 | 75.3158 | 96.5801 | 84.0828 | 8348 | 2736 | 8331 | 295 | 249 | 84.4068 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 84.6325 | 73.4723 | 99.7902 | 54.7416 | 8212 | 2965 | 3329 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 84.6320 | 90.1536 | 79.7478 | 64.8768 | 998 | 109 | 1012 | 257 | 243 | 94.5525 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | * | 84.6294 | 74.6420 | 97.7024 | 85.2765 | 34875 | 11848 | 34869 | 820 | 54 | 6.5854 | |
| qzeng-custom | INDEL | I1_5 | * | hetalt | 84.6275 | 73.4792 | 99.7637 | 61.8865 | 8226 | 2969 | 3378 | 8 | 6 | 75.0000 | |
| mlin-fermikit | INDEL | * | map_siren | homalt | 84.6161 | 81.5066 | 87.9724 | 79.3852 | 2164 | 491 | 2165 | 296 | 264 | 89.1892 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | homalt | 84.6154 | 91.6667 | 78.5714 | 97.0276 | 11 | 1 | 11 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.6154 | 84.6154 | 84.6154 | 87.3047 | 55 | 10 | 55 | 10 | 10 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.5610 | 11 | 4 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.5610 | 11 | 4 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 93.3333 | 11 | 4 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 93.9891 | 11 | 4 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 84.6154 | 91.6667 | 78.5714 | 99.2269 | 11 | 1 | 11 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 84.6154 | 95.6522 | 75.8621 | 82.5301 | 22 | 1 | 22 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.5000 | 11 | 4 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.9772 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8023 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8750 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | het | 84.6154 | 100.0000 | 73.3333 | 98.2353 | 33 | 0 | 33 | 12 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8023 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8750 | 11 | 4 | 11 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.6154 | 78.5714 | 91.6667 | 96.0656 | 33 | 9 | 33 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7164 | 11 | 4 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7930 | 11 | 4 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 84.6154 | 91.6667 | 78.5714 | 98.6090 | 22 | 2 | 22 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.9444 | 11 | 4 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.0027 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | * | 84.6154 | 73.3333 | 100.0000 | 91.9708 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 90.9836 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 91.8519 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m0_e0 | * | 84.6154 | 73.3333 | 100.0000 | 91.9118 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 84.6154 | 73.3333 | 100.0000 | 94.6602 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 85.8824 | 11 | 4 | 12 | 0 | 0 | ||