PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37351-37400 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2090 | 74.3119 | 99.8512 | 25.9912 | 648 | 224 | 671 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.2074 | 76.7402 | 95.7746 | 76.7746 | 1356 | 411 | 1360 | 60 | 34 | 56.6667 | |
| qzeng-custom | INDEL | I16_PLUS | * | het | 85.2063 | 89.5879 | 81.2333 | 62.0542 | 2435 | 283 | 2740 | 633 | 156 | 24.6445 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 85.2043 | 75.0733 | 98.4962 | 64.0541 | 256 | 85 | 262 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | * | 85.2037 | 74.8320 | 98.9130 | 83.0315 | 1002 | 337 | 1001 | 11 | 5 | 45.4545 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 85.2029 | 86.1111 | 84.3137 | 83.9117 | 31 | 5 | 43 | 8 | 3 | 37.5000 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | * | 85.2021 | 77.7372 | 94.2529 | 96.3701 | 1065 | 305 | 1066 | 65 | 29 | 44.6154 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | * | 85.1994 | 91.0429 | 80.0608 | 87.9508 | 1423 | 140 | 2108 | 525 | 180 | 34.2857 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1950 | 75.2331 | 98.1978 | 84.5085 | 22998 | 7571 | 22994 | 422 | 45 | 10.6635 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 85.1946 | 78.0702 | 93.7500 | 92.5869 | 89 | 25 | 90 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1927 | 82.3529 | 88.2353 | 94.1379 | 42 | 9 | 30 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 76.5957 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 78.0000 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | homalt | 85.1872 | 78.2396 | 93.4890 | 80.8459 | 960 | 267 | 1321 | 92 | 13 | 14.1304 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.0360 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.8644 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 85.9091 | 23 | 0 | 23 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.2029 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.7598 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 94.8827 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 91.0448 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 92.0000 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 92.1824 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 85.1837 | 88.4652 | 82.1369 | 53.6130 | 7401 | 965 | 7403 | 1610 | 1503 | 93.3540 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.1821 | 88.1350 | 82.4206 | 72.9298 | 5378 | 724 | 5448 | 1162 | 656 | 56.4544 | |
| mlin-fermikit | INDEL | I6_15 | * | * | 85.1815 | 80.6671 | 90.2311 | 47.3715 | 20024 | 4799 | 20108 | 2177 | 2161 | 99.2650 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | hetalt | 85.1780 | 74.4939 | 99.4398 | 52.4000 | 184 | 63 | 355 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | * | 85.1771 | 81.9318 | 88.6900 | 71.8362 | 60600 | 13364 | 60413 | 7704 | 2033 | 26.3889 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | het | 85.1770 | 77.4648 | 94.5946 | 79.8365 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | het | 85.1770 | 77.4648 | 94.5946 | 79.9458 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.1694 | 82.0755 | 88.5057 | 59.1549 | 87 | 19 | 462 | 60 | 43 | 71.6667 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.1692 | 86.5403 | 83.8409 | 73.2417 | 4430 | 689 | 4405 | 849 | 604 | 71.1425 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1656 | 90.9091 | 80.1047 | 46.7967 | 300 | 30 | 1071 | 266 | 88 | 33.0827 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1656 | 75.2364 | 98.1141 | 84.6685 | 22999 | 7570 | 22995 | 442 | 41 | 9.2760 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.1654 | 74.5662 | 99.2771 | 27.6058 | 1633 | 557 | 1648 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | het | 85.1643 | 97.8866 | 75.3687 | 92.7134 | 1899 | 41 | 1891 | 618 | 13 | 2.1036 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.1628 | 98.3287 | 75.1064 | 48.2379 | 353 | 6 | 353 | 117 | 116 | 99.1453 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 85.1562 | 98.1982 | 75.1724 | 96.7963 | 109 | 2 | 109 | 36 | 1 | 2.7778 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | homalt | 85.1522 | 74.4425 | 99.4611 | 88.0122 | 1302 | 447 | 1292 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.1516 | 96.8750 | 75.9593 | 78.6419 | 961 | 31 | 970 | 307 | 3 | 0.9772 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | homalt | 85.1502 | 74.4357 | 99.4681 | 88.0298 | 1319 | 453 | 1309 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.7759 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8650 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8017 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8017 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | * | 85.1445 | 92.4716 | 78.8934 | 90.8735 | 1302 | 106 | 1768 | 473 | 151 | 31.9239 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | * | 85.1433 | 74.4759 | 99.3775 | 89.0629 | 2238 | 767 | 2235 | 14 | 8 | 57.1429 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | het | 85.1359 | 81.6246 | 88.9630 | 91.9002 | 1035 | 233 | 1201 | 149 | 28 | 18.7919 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | het | 85.1353 | 81.5550 | 89.0443 | 91.4683 | 986 | 223 | 1146 | 141 | 27 | 19.1489 | |