PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36751-36800 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 95.6044 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 98.1982 | 3 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.7500 | 6 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.2308 | 6 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.1039 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 82.3529 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.3333 | 6 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 89.1473 | 24 | 4 | 24 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | het | 85.7143 | 100.0000 | 75.0000 | 42.8571 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 58.0247 | 63 | 21 | 34 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 60.0000 | 39 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 87.8049 | 3 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 90.0000 | 81.8182 | 99.3612 | 9 | 1 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7273 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.9362 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 82.3529 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.7143 | 82.3529 | 89.3617 | 90.8382 | 42 | 9 | 42 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 85.7143 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 76.4706 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 81.6901 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 85.7143 | 80.0000 | 92.3077 | 83.5443 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 85.7143 | 80.0000 | 92.3077 | 83.7500 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 96.7480 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 9 | 3 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 6 | 2 | 6 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 95.9732 | 6 | 2 | 6 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 92.8571 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.0000 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.9849 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 47.6190 | 9 | 3 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.9844 | 246 | 82 | 256 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 78.9474 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 80.9524 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.1379 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.3820 | 39 | 13 | 40 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | homalt | 85.7143 | 100.0000 | 75.0000 | 57.8947 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 64.2857 | 15 | 5 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.3966 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.8413 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 85.7143 | 85.7143 | 85.7143 | 96.9298 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |