PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36701-36750 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l250_m1_e0 | het | 85.8491 | 95.7895 | 77.7778 | 97.3448 | 182 | 8 | 182 | 52 | 1 | 1.9231 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8472 | 76.6302 | 97.5845 | 55.5436 | 1610 | 491 | 1616 | 40 | 37 | 92.5000 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | hetalt | 85.8447 | 75.2000 | 100.0000 | 91.2621 | 94 | 31 | 27 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 85.8407 | 75.1938 | 100.0000 | 69.0590 | 194 | 64 | 194 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8405 | 84.9119 | 86.7896 | 57.5804 | 1784 | 317 | 1695 | 258 | 252 | 97.6744 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 85.8383 | 78.3200 | 94.9533 | 28.7854 | 6340 | 1755 | 2032 | 108 | 63 | 58.3333 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | * | 85.8371 | 91.9791 | 80.4640 | 88.3383 | 1938 | 169 | 2636 | 640 | 251 | 39.2188 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.8330 | 76.2097 | 98.2379 | 87.7562 | 189 | 59 | 223 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | * | 85.8304 | 80.5714 | 91.8239 | 87.1255 | 141 | 34 | 146 | 13 | 13 | 100.0000 | |
| astatham-gatk | SNP | * | map_l125_m2_e1 | het | 85.8279 | 75.3644 | 99.6653 | 80.7852 | 22338 | 7302 | 22332 | 75 | 27 | 36.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.8273 | 81.4433 | 90.7101 | 41.4412 | 2844 | 648 | 7128 | 730 | 664 | 90.9589 | |
| gduggal-snapvard | SNP | tv | tech_badpromoters | * | 85.8248 | 84.7222 | 86.9565 | 55.7692 | 61 | 11 | 60 | 9 | 1 | 11.1111 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.8238 | 91.8033 | 80.5755 | 80.1994 | 112 | 10 | 112 | 27 | 16 | 59.2593 | |
| astatham-gatk | SNP | * | map_l125_m2_e0 | het | 85.8236 | 75.3598 | 99.6616 | 80.7499 | 22094 | 7224 | 22088 | 75 | 27 | 36.0000 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | * | 85.8099 | 88.8445 | 82.9757 | 86.6598 | 3337 | 419 | 4601 | 944 | 443 | 46.9280 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.8077 | 94.1176 | 78.8462 | 89.0063 | 48 | 3 | 41 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 85.8044 | 75.3942 | 99.5501 | 38.3274 | 1578 | 515 | 1549 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | het | 85.8034 | 91.6667 | 80.6452 | 93.8370 | 22 | 2 | 25 | 6 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.8009 | 91.8776 | 80.4781 | 48.4090 | 11504 | 1017 | 11378 | 2760 | 2725 | 98.7319 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 85.7951 | 83.9912 | 87.6782 | 74.5242 | 3043 | 580 | 3814 | 536 | 514 | 95.8955 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | SNP | ti | HG002compoundhet | * | 85.7906 | 91.8526 | 80.4793 | 50.9850 | 16054 | 1424 | 16120 | 3910 | 442 | 11.3043 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | * | 85.7904 | 93.9689 | 78.9216 | 93.5231 | 483 | 31 | 483 | 129 | 24 | 18.6047 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002complexvar | * | 85.7883 | 79.5496 | 93.0889 | 62.2772 | 1307 | 336 | 1320 | 98 | 72 | 73.4694 | |
| astatham-gatk | INDEL | I6_15 | HG002compoundhet | het | 85.7861 | 97.5962 | 76.5258 | 84.3382 | 203 | 5 | 163 | 50 | 49 | 98.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7849 | 95.2033 | 78.0622 | 70.1093 | 913 | 46 | 854 | 240 | 21 | 8.7500 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.7805 | 75.7534 | 98.8670 | 41.8516 | 1659 | 531 | 1658 | 19 | 17 | 89.4737 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.7762 | 80.3859 | 91.9414 | 59.8529 | 250 | 61 | 251 | 22 | 20 | 90.9091 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.7747 | 91.3682 | 80.8266 | 73.3477 | 1990 | 188 | 1897 | 450 | 430 | 95.5556 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 85.7732 | 78.7879 | 94.1176 | 99.0950 | 26 | 7 | 32 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | het | 85.7607 | 82.4769 | 89.3168 | 89.6940 | 1878 | 399 | 2157 | 258 | 42 | 16.2791 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.7593 | 76.8439 | 97.0149 | 63.3307 | 448 | 135 | 455 | 14 | 12 | 85.7143 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | * | 85.7572 | 80.4393 | 91.8280 | 64.0820 | 5457 | 1327 | 5551 | 494 | 372 | 75.3036 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.7527 | 75.1764 | 99.7922 | 61.3457 | 23125 | 7636 | 23046 | 48 | 38 | 79.1667 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.7525 | 99.1025 | 75.5722 | 63.2591 | 3975 | 36 | 4028 | 1302 | 33 | 2.5346 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.7525 | 97.3468 | 76.6261 | 86.4563 | 4036 | 110 | 4088 | 1247 | 102 | 8.1796 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 85.7504 | 85.7485 | 85.7523 | 74.5958 | 3225 | 536 | 3220 | 535 | 212 | 39.6262 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 85.7504 | 85.7485 | 85.7523 | 74.5958 | 3225 | 536 | 3220 | 535 | 212 | 39.6262 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.7476 | 75.5007 | 99.2126 | 87.1486 | 1131 | 367 | 1134 | 9 | 8 | 88.8889 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7428 | 78.4150 | 94.5813 | 55.1133 | 752 | 207 | 768 | 44 | 43 | 97.7273 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | het | 85.7424 | 98.1818 | 76.1006 | 89.7593 | 756 | 14 | 968 | 304 | 95 | 31.2500 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | het | 85.7414 | 98.1675 | 76.1076 | 89.6257 | 750 | 14 | 962 | 302 | 95 | 31.4570 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | hetalt | 85.7294 | 75.3098 | 99.4953 | 51.3953 | 1580 | 518 | 1577 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.7255 | 84.9037 | 86.5634 | 80.2326 | 36793 | 6542 | 37456 | 5814 | 5159 | 88.7341 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7237 | 78.9364 | 93.7881 | 67.9922 | 757 | 202 | 770 | 51 | 38 | 74.5098 | |
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.9209 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 85.7143 | 80.0000 | 92.3077 | 90.1515 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 94.9367 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 95.5056 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |