PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36151-36200 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.8775 | 97.0427 | 78.6399 | 89.4490 | 886 | 27 | 902 | 245 | 33 | 13.4694 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 86.8762 | 81.9779 | 92.3970 | 60.2527 | 3266 | 718 | 3342 | 275 | 210 | 76.3636 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.8726 | 86.3602 | 87.3912 | 57.0498 | 27124 | 4284 | 27204 | 3925 | 3577 | 91.1338 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.8726 | 86.3602 | 87.3912 | 57.0498 | 27124 | 4284 | 27204 | 3925 | 3577 | 91.1338 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.8721 | 77.5325 | 98.7699 | 72.5739 | 1370 | 397 | 1365 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | het | 86.8689 | 77.3061 | 99.1314 | 82.6916 | 23147 | 6795 | 23169 | 203 | 61 | 30.0493 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | het | 86.8687 | 87.7551 | 86.0000 | 83.9744 | 43 | 6 | 43 | 7 | 4 | 57.1429 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.8622 | 82.8909 | 91.2332 | 40.8368 | 3154 | 651 | 1561 | 150 | 79 | 52.6667 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.8589 | 78.9855 | 96.4758 | 90.1732 | 218 | 58 | 219 | 8 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.8556 | 84.1808 | 89.7059 | 59.6838 | 149 | 28 | 183 | 21 | 20 | 95.2381 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | het | 86.8541 | 76.8887 | 99.7875 | 73.5726 | 23022 | 6920 | 23015 | 49 | 23 | 46.9388 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 86.8534 | 76.7619 | 100.0000 | 76.0472 | 403 | 122 | 406 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.8526 | 95.8946 | 79.3688 | 62.7255 | 5606 | 240 | 6363 | 1654 | 1576 | 95.2842 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.8526 | 95.8946 | 79.3688 | 62.7255 | 5606 | 240 | 6363 | 1654 | 1576 | 95.2842 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.8494 | 93.7143 | 80.9217 | 61.7014 | 984 | 66 | 878 | 207 | 45 | 21.7391 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | hetalt | 86.8421 | 76.7442 | 100.0000 | 93.2806 | 33 | 10 | 17 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.8336 | 77.6504 | 98.4802 | 88.9449 | 271 | 78 | 324 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 86.8330 | 79.0909 | 96.2552 | 92.7907 | 609 | 161 | 694 | 27 | 21 | 77.7778 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | homalt | 86.8291 | 85.5694 | 88.1265 | 64.0732 | 3291 | 555 | 3288 | 443 | 348 | 78.5553 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 86.8238 | 79.0267 | 96.3280 | 91.0593 | 682 | 181 | 787 | 30 | 23 | 76.6667 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.8217 | 78.3217 | 97.3913 | 92.9405 | 112 | 31 | 112 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 86.8178 | 81.4097 | 92.9955 | 56.2615 | 2899 | 662 | 2881 | 217 | 142 | 65.4378 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.8145 | 81.4642 | 92.9171 | 53.5981 | 2615 | 595 | 2768 | 211 | 211 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 86.8132 | 90.8046 | 83.1579 | 94.5371 | 79 | 8 | 79 | 16 | 4 | 25.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.8106 | 91.8782 | 82.2727 | 58.6466 | 181 | 16 | 181 | 39 | 37 | 94.8718 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.8064 | 78.5714 | 96.9697 | 88.5813 | 33 | 9 | 32 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | homalt | 86.8060 | 85.3282 | 88.3359 | 70.2453 | 6252 | 1075 | 6248 | 825 | 675 | 81.8182 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 86.8020 | 78.3505 | 97.2973 | 84.9899 | 76 | 21 | 72 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.7998 | 77.2097 | 99.1101 | 56.3009 | 3564 | 1052 | 3564 | 32 | 5 | 15.6250 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | * | 86.7966 | 84.2900 | 89.4569 | 99.1194 | 279 | 52 | 280 | 33 | 3 | 9.0909 | |
| ckim-gatk | SNP | ti | map_l100_m0_e0 | het | 86.7938 | 78.2593 | 97.4176 | 85.5089 | 10943 | 3040 | 10940 | 290 | 35 | 12.0690 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 86.7930 | 84.0381 | 89.7346 | 47.2948 | 2027 | 385 | 6626 | 758 | 648 | 85.4881 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.7925 | 95.8333 | 79.3103 | 78.0303 | 23 | 1 | 23 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 86.7925 | 100.0000 | 76.6667 | 98.0855 | 46 | 0 | 46 | 14 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7218 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7640 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.7925 | 88.4615 | 85.1852 | 96.0641 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.7925 | 88.4615 | 85.1852 | 96.0813 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 86.7925 | 76.6667 | 100.0000 | 71.4286 | 23 | 7 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.6792 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | het | 86.7925 | 100.0000 | 76.6667 | 94.4954 | 46 | 0 | 46 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.8198 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.7578 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 89.0511 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7218 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | het | 86.7915 | 76.9719 | 99.4830 | 83.9440 | 5582 | 1670 | 5580 | 29 | 8 | 27.5862 | |