PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3551-3600 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 67.0807 | 53 | 0 | 53 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.1026 | 13 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 2 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6303 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5075 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3146 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1525 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2036 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.4951 | 16 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 32.8358 | 180 | 0 | 180 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 39.1753 | 59 | 0 | 59 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8498 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8445 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9853 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1935 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5812 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2000 | 17 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2384 | 19 | 0 | 19 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3566 | 19 | 0 | 19 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5116 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9641 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6140 | 10 | 0 | 10 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3471 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3740 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.1739 | 22 | 0 | 22 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3077 | 68 | 0 | 68 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8500 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.4203 | 2 | 0 | 2 | 0 | 0 | ||