PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35251-35300 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.3102 | 87.5375 | 89.0966 | 84.7216 | 583 | 83 | 572 | 70 | 42 | 60.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 88.3102 | 87.5375 | 89.0966 | 84.7216 | 583 | 83 | 572 | 70 | 42 | 60.0000 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | * | 88.3100 | 80.2832 | 98.1201 | 78.5916 | 20298 | 4985 | 20251 | 388 | 306 | 78.8660 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 88.3047 | 90.1065 | 86.5734 | 76.6949 | 592 | 65 | 619 | 96 | 50 | 52.0833 | |
| ckim-isaac | SNP | tv | HG002compoundhet | homalt | 88.3010 | 79.3093 | 99.5923 | 36.8889 | 2687 | 701 | 2687 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | homalt | 88.3005 | 79.1391 | 99.8607 | 89.4279 | 2151 | 567 | 2150 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | het | 88.2979 | 97.6471 | 80.5825 | 43.4066 | 83 | 2 | 83 | 20 | 4 | 20.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 88.2979 | 92.2222 | 84.6939 | 93.9840 | 83 | 7 | 83 | 15 | 3 | 20.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.2883 | 83.0508 | 94.2308 | 77.3913 | 49 | 10 | 49 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.2868 | 81.1828 | 96.7532 | 67.3729 | 151 | 35 | 149 | 5 | 4 | 80.0000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.2783 | 97.3461 | 80.7559 | 60.7530 | 27217 | 742 | 27478 | 6548 | 433 | 6.6127 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | * | 88.2633 | 92.9825 | 84.0000 | 96.7235 | 106 | 8 | 105 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | homalt | 88.2609 | 79.0767 | 99.8589 | 89.3960 | 2124 | 562 | 2123 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.2579 | 79.4286 | 99.2958 | 64.2317 | 139 | 36 | 141 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e1 | het | 88.2543 | 97.7266 | 80.4560 | 93.2754 | 3224 | 75 | 3211 | 780 | 22 | 2.8205 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | het | 88.2507 | 86.4706 | 90.1055 | 86.0431 | 735 | 115 | 683 | 75 | 74 | 98.6667 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.2507 | 80.5274 | 97.6127 | 83.3538 | 4367 | 1056 | 4375 | 107 | 45 | 42.0561 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.2507 | 80.5274 | 97.6127 | 83.3538 | 4367 | 1056 | 4375 | 107 | 45 | 42.0561 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | het | 88.2494 | 81.0510 | 96.8511 | 86.4318 | 23012 | 5380 | 23006 | 748 | 54 | 7.2193 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.2477 | 83.3900 | 93.7063 | 86.7826 | 1471 | 293 | 1474 | 99 | 13 | 13.1313 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | * | 88.2470 | 80.1862 | 98.1096 | 78.5989 | 20073 | 4960 | 20033 | 386 | 305 | 79.0155 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.9666 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 88.2450 | 85.0667 | 91.6700 | 56.4134 | 4973 | 873 | 4523 | 411 | 383 | 93.1873 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 88.2450 | 80.8166 | 97.1772 | 89.7454 | 8729 | 2072 | 8744 | 254 | 45 | 17.7165 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.2450 | 85.0667 | 91.6700 | 56.4134 | 4973 | 873 | 4523 | 411 | 383 | 93.1873 | |
| qzeng-custom | INDEL | * | map_siren | het | 88.2436 | 85.8917 | 90.7279 | 86.0479 | 3872 | 636 | 4325 | 442 | 93 | 21.0407 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 88.2413 | 79.4231 | 99.2621 | 38.3627 | 2478 | 642 | 3094 | 23 | 17 | 73.9130 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 88.2389 | 79.1284 | 99.7203 | 27.1152 | 690 | 182 | 713 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 88.2368 | 79.4297 | 99.2405 | 30.2120 | 390 | 101 | 392 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.2353 | 88.2353 | 88.2353 | 98.6625 | 15 | 2 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | * | 88.2353 | 83.3333 | 93.7500 | 96.6736 | 15 | 3 | 15 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.2353 | 78.9474 | 100.0000 | 91.7160 | 15 | 4 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.2353 | 78.9474 | 100.0000 | 91.8605 | 15 | 4 | 14 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.2353 | 78.9474 | 100.0000 | 70.9677 | 15 | 4 | 18 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | * | 88.2353 | 88.2353 | 88.2353 | 54.0541 | 15 | 2 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 88.2353 | 78.9474 | 100.0000 | 93.3921 | 15 | 4 | 15 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 88.2353 | 100.0000 | 78.9474 | 98.8527 | 15 | 0 | 15 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0000 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 88.2353 | 83.3333 | 93.7500 | 89.5425 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.2353 | 83.3333 | 93.7500 | 91.0615 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.2353 | 83.3333 | 93.7500 | 91.1111 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | tech_badpromoters | * | 88.2353 | 78.9474 | 100.0000 | 40.0000 | 15 | 4 | 15 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | homalt | 88.2353 | 78.9474 | 100.0000 | 86.8421 | 15 | 4 | 15 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | het | 88.2353 | 90.9091 | 85.7143 | 95.6950 | 30 | 3 | 30 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 88.2321 | 85.5737 | 91.0609 | 53.6742 | 26877 | 4531 | 26832 | 2634 | 2540 | 96.4313 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 88.2321 | 85.5737 | 91.0609 | 53.6742 | 26877 | 4531 | 26832 | 2634 | 2540 | 96.4313 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 88.2318 | 85.4772 | 91.1700 | 92.4108 | 412 | 70 | 413 | 40 | 4 | 10.0000 | |