PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34801-34850 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.5207 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.4166 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.3998 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3958 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 97.3464 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 93.6275 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 96.9925 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7302 | 12 | 3 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.1667 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 87.5000 | 4 | 1 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 89.5833 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 88.8889 | 80.0000 | 100.0000 | 88.6792 | 24 | 6 | 24 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 88.8889 | 83.0189 | 95.6522 | 89.6861 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 89.6996 | 24 | 6 | 24 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | * | 88.8889 | 83.0189 | 95.6522 | 89.9563 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 89.8305 | 24 | 6 | 24 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 95.6522 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.9044 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 96.0526 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.2678 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.8889 | 97.7778 | 81.4815 | 79.3103 | 44 | 1 | 44 | 10 | 6 | 60.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 88.3721 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 88.8889 | 88.8889 | 96.8421 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 94.2797 | 32 | 8 | 27 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | decoy | het | 88.8889 | 100.0000 | 80.0000 | 98.8479 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.9412 | 8 | 2 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 94.0789 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 75.9259 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 81.2500 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.4156 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 80.0000 | 100.0000 | 98.3193 | 8 | 2 | 8 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | hetalt | 88.8889 | 100.0000 | 80.0000 | 86.3014 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 88.8889 | 88.8889 | 94.0000 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 61.5385 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.4029 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8944 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.1531 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |