PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34701-34750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5517 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5753 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | homalt | 88.8889 | 88.8889 | 88.8889 | 50.0000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.4521 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8166 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 88.8889 | 80.0000 | 100.0000 | 99.5595 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.6190 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.1961 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | * | 88.8889 | 92.3077 | 85.7143 | 94.7269 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | * | 88.8889 | 92.3077 | 85.7143 | 94.7955 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 95.0495 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.1481 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 98.2222 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 88.8889 | 80.0000 | 100.0000 | 99.6105 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8750 | 12 | 0 | 12 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.8333 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.8904 | 12 | 3 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 94.6429 | 12 | 0 | 12 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.4654 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.3545 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 96.1538 | 2 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 98.4026 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.8033 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3108 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 80.0000 | 100.0000 | 97.8723 | 8 | 2 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 98.2818 | 6 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 100.0000 | 80.0000 | 97.1989 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 88.8889 | 88.8889 | 93.8776 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9788 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 69.2308 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 98.3660 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 95.2381 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 60.0000 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 45.4545 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 7.1429 | 12 | 3 | 13 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.1429 | 12 | 3 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 55.5556 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | het | 88.8889 | 100.0000 | 80.0000 | 93.6709 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 74.6479 | 44 | 11 | 18 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 95.9677 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.9592 | 4 | 1 | 4 | 0 | 0 | ||