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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 689 690 691 692 693 694 695 696 697 ... 1720 1721 » 34601-34650 / 86044 show all
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	89.1293	81.6555	98.1092	39.4326	2190	492	2283	44	37	84.0909
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	89.1292	82.8571	96.4286	74.5455	29	6	27	1	1	100.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	89.1292	82.8571	96.4286	83.8150	29	6	27	1	0	0.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	89.1252	99.3103	80.8349	77.3820	432	3	426	101	62	61.3861
anovak-vg	SNP	tv	map_l125_m2_e1	homalt	89.1235	80.9516	99.1306	69.1627	4917	1157	4903	43	32	74.4186
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.1203	97.1933	82.2855	70.9397	2424	70	2369	510	8	1.5686
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	89.1201	81.4606	98.3693	34.9531	13608	3097	14116	234	204	87.1795
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.1201	81.4606	98.3693	34.9531	13608	3097	14116	234	204	87.1795
gduggal-bwafb	INDEL	D6_15	map_l100_m1_e0	*	89.1165	82.1705	97.3451	85.2480	212	46	220	6	3	50.0000
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.1158	94.4808	84.3273	67.4932	2020	118	2432	452	436	96.4602
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.1155	94.7826	84.0878	89.9821	1199	66	1226	232	79	34.0517
gduggal-snapplat	INDEL	D1_5	map_l100_m2_e0	homalt	89.1147	81.8331	97.8188	86.9556	500	111	583	13	1	7.6923
gduggal-snapvard	INDEL	D1_5	map_l100_m2_e0	*	89.1114	94.4125	84.3738	85.7309	1808	107	2284	423	173	40.8983
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.1102	86.0761	92.3660	60.6253	26236	4244	33152	2740	2400	87.5912
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.1102	86.0761	92.3660	60.6253	26236	4244	33152	2740	2400	87.5912
ndellapenna-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	89.1100	88.5714	89.6552	88.5827	31	4	26	3	1	33.3333
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.1089	81.8182	97.8261	90.8911	135	30	135	3	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	89.1082	85.6054	92.9098	41.8941	1011	170	1009	77	77	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	89.1082	96.8085	82.5427	65.8679	455	15	435	92	82	89.1304
ciseli-custom	INDEL	I1_5	*	homalt	89.1001	89.2384	88.9622	46.9528	53925	6503	53678	6660	6265	94.0691
gduggal-bwafb	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	89.0929	83.6170	95.3363	63.5012	1179	231	1942	95	38	40.0000
qzeng-custom	INDEL	*	map_siren	*	89.0924	85.8165	92.6283	83.9353	6359	1051	6823	543	116	21.3628
raldana-dualsentieon	INDEL	*	map_l250_m0_e0	het	89.0909	92.4528	85.9649	97.0235	49	4	49	8	0	0.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	89.0909	80.3279	100.0000	51.0000	49	12	49	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	89.0909	80.3279	100.0000	55.0459	49	12	49	0	0
cchapple-custom	INDEL	*	map_l250_m0_e0	het	89.0909	92.4528	85.9649	97.7603	49	4	49	8	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.0881	92.2652	86.1224	81.9720	334	28	211	34	34	100.0000
anovak-vg	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	89.0850	93.1385	85.3697	68.5884	2932	216	3256	558	215	38.5305
gduggal-bwaplat	SNP	ti	HG002compoundhet	*	89.0817	91.8641	86.4629	42.2720	16056	1422	16121	2524	263	10.4200
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	89.0808	82.0000	97.5000	46.5649	41	9	273	7	5	71.4286
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	89.0761	81.4952	98.2120	71.9556	1537	349	1538	28	27	96.4286
jpowers-varprowl	INDEL	I1_5	map_l250_m1_e0	het	89.0756	88.3333	89.8305	97.1036	53	7	53	6	3	50.0000
jpowers-varprowl	SNP	tv	map_l250_m0_e0	het	89.0728	94.0559	84.5912	95.1175	538	34	538	98	12	12.2449
anovak-vg	SNP	tv	map_l125_m2_e0	homalt	89.0712	80.8709	99.1223	69.1421	4866	1151	4856	43	32	74.4186
gduggal-snapvard	SNP	ti	map_l150_m0_e0	*	89.0696	94.6444	84.1150	85.4263	7440	421	7371	1392	107	7.6868
jlack-gatk	INDEL	D16_PLUS	map_siren	*	89.0690	91.6084	86.6667	94.5750	131	12	130	20	3	15.0000
mlin-fermikit	INDEL	D6_15	HG002complexvar	homalt	89.0670	95.2951	83.6029	66.2028	1114	55	1137	223	214	95.9641
gduggal-bwavard	INDEL	D1_5	map_l150_m1_e0	het	89.0608	98.7552	81.0997	91.6235	476	6	472	110	12	10.9091
hfeng-pmm2	INDEL	D1_5	HG002compoundhet	homalt	89.0601	99.3127	80.7263	78.1840	289	2	289	69	69	100.0000
ciseli-custom	SNP	tv	map_l100_m1_e0	homalt	89.0533	87.6147	90.5399	62.3935	7923	1120	7915	827	623	75.3325
gduggal-snapplat	SNP	tv	tech_badpromoters	*	89.0511	84.7222	93.8462	77.3519	61	11	61	4	0	0.0000
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.0456	96.0304	83.0080	88.0462	2274	94	2296	470	74	15.7447
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.0414	87.1669	90.9983	69.2267	2126	313	2133	211	14	6.6351
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.0411	92.8475	85.5346	72.4341	688	53	680	115	105	91.3043
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.0400	86.8852	91.3043	57.9268	106	16	126	12	11	91.6667
gduggal-snapplat	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	89.0395	80.9340	98.9493	51.2411	5459	1286	5462	58	26	44.8276
asubramanian-gatk	INDEL	D6_15	HG002compoundhet	het	89.0353	96.6121	82.5605	68.4177	827	29	819	173	168	97.1098
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.0334	80.6002	99.4376	31.3443	1907	459	1945	11	10	90.9091
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.0264	97.4704	81.9288	85.3506	1233	32	943	208	28	13.4615
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	89.0249	97.7996	81.6952	39.8894	10178	229	10564	2367	2280	96.3245

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