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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 685 686 687 688 689 690 691 692 693 ... 1720 1721 » 34401-34450 / 86044 show all
jlack-gatk	INDEL	D1_5	map_l125_m0_e0	het	89.4716	98.2609	82.1256	91.8808	339	6	340	74	2	2.7027
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.4671	81.5166	99.1361	72.5927	1376	312	1377	12	10	83.3333
anovak-vg	SNP	*	tech_badpromoters	*	89.4635	84.0764	95.5882	39.8230	132	25	130	6	6	100.0000
ciseli-custom	INDEL	D1_5	segdup	*	89.4589	90.6618	88.2875	95.2028	1000	103	995	132	80	60.6061
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.4563	82.1519	98.1864	56.4502	1947	423	1949	36	33	91.6667
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	89.4551	92.2272	86.8448	82.4170	6348	535	6760	1024	420	41.0156
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.4545	89.1929	89.7177	61.8267	27186	3294	25967	2976	2168	72.8495
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.4545	89.1929	89.7177	61.8267	27186	3294	25967	2976	2168	72.8495
ndellapenna-hhga	INDEL	D16_PLUS	HG002complexvar	het	89.4513	85.6369	93.6214	62.1643	948	159	910	62	44	70.9677
jmaeng-gatk	INDEL	D16_PLUS	map_l100_m2_e1	*	89.4472	91.7526	87.2549	95.2909	89	8	89	13	4	30.7692
astatham-gatk	SNP	tv	map_l250_m1_e0	het	89.4463	81.8131	98.6505	91.5618	1462	325	1462	20	3	15.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.4410	87.8049	91.1392	77.4286	72	10	72	7	7	100.0000
gduggal-snapfb	INDEL	I1_5	map_l150_m2_e1	hetalt	89.4410	90.0000	88.8889	96.1373	9	1	8	1	1	100.0000
gduggal-bwafb	INDEL	C1_5	*	*	89.4410	90.0000	88.8889	97.6804	9	1	8	1	0	0.0000
eyeh-varpipe	INDEL	D6_15	HG002complexvar	het	89.4381	87.7564	91.1854	45.1275	2738	382	2100	203	195	96.0591
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.4360	81.0127	99.8141	38.0184	512	120	537	1	1	100.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	89.4328	91.9075	87.0879	78.1250	318	28	317	47	8	17.0213
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	89.4309	80.8824	100.0000	97.0478	55	13	55	0	0
gduggal-bwavard	SNP	*	map_l150_m0_e0	het	89.4308	97.6574	82.4825	88.0388	7754	186	7675	1630	60	3.6810
ckim-gatk	SNP	*	map_l100_m2_e0	*	89.4294	82.0710	98.2373	79.5869	60703	13261	60692	1089	86	7.8972
gduggal-snapvard	SNP	ti	HG002compoundhet	homalt	89.4254	81.9989	98.3311	34.6481	6063	1331	5067	86	63	73.2558
hfeng-pmm2	INDEL	I1_5	HG002compoundhet	het	89.4149	87.4118	91.5119	86.7066	743	107	690	64	62	96.8750
jmaeng-gatk	SNP	*	map_l100_m2_e0	*	89.4136	82.0994	98.1585	79.7900	60724	13240	60713	1139	79	6.9359
ltrigg-rtg1	INDEL	D1_5	map_l100_m1_e0	hetalt	89.4118	80.8511	100.0000	93.5201	38	9	37	0	0
qzeng-custom	INDEL	D1_5	map_l100_m1_e0	hetalt	89.4118	80.8511	100.0000	95.5556	38	9	2	0	0
gduggal-snapfb	SNP	*	tech_badpromoters	het	89.4118	98.7013	81.7204	64.3678	76	1	76	17	0	0.0000
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	89.4118	80.8511	100.0000	30.9091	38	9	38	0	0
gduggal-bwafb	INDEL	I6_15	map_siren	*	89.4095	81.6393	98.8142	76.5306	249	56	250	3	3	100.0000
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
ghariani-varprowl	INDEL	*	segdup	*	89.4068	90.3756	88.4586	97.2748	2310	246	2307	301	223	74.0864
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.4040	81.8182	98.5401	90.7495	135	30	135	2	0	0.0000
eyeh-varpipe	INDEL	C6_15	*	*	89.4022	100.0000	80.8354	93.6057	7	0	329	78	51	65.3846
gduggal-snapvard	SNP	tv	map_l125_m0_e0	*	89.3998	96.0489	83.6117	82.4411	6369	262	6357	1246	62	4.9759
ckim-isaac	INDEL	I1_5	map_l100_m2_e0	het	89.3971	81.3367	99.2308	86.3273	645	148	645	5	1	20.0000
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e0	het	89.3939	89.3939	89.3939	97.2454	59	7	59	7	3	42.8571
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e1	het	89.3939	89.3939	89.3939	97.3419	59	7	59	7	3	42.8571
astatham-gatk	SNP	ti	map_l250_m2_e1	het	89.3914	81.4792	99.0055	92.4310	2688	611	2688	27	9	33.3333
ghariani-varprowl	INDEL	D1_5	map_l150_m2_e1	het	89.3913	98.4674	81.8471	92.4273	514	8	514	114	21	18.4211
ckim-gatk	INDEL	D16_PLUS	map_l100_m1_e0	*	89.3855	91.9540	86.9565	95.3252	80	7	80	12	4	33.3333
jli-custom	INDEL	D1_5	map_l100_m2_e1	hetalt	89.3838	82.3529	97.7273	91.6667	42	9	43	1	0	0.0000
rpoplin-dv42	INDEL	I16_PLUS	HG002compoundhet	*	89.3838	84.2744	95.1528	48.3959	1806	337	1806	92	90	97.8261
mlin-fermikit	INDEL	D1_5	HG002complexvar	hetalt	89.3834	81.7308	98.6171	71.1327	1105	247	1141	16	16	100.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	89.3757	99.3548	81.2183	83.8259	154	1	160	37	34	91.8919
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	89.3755	92.9518	86.0642	79.3543	13544	1027	13809	2236	557	24.9106
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	89.3755	92.9518	86.0642	79.3543	13544	1027	13809	2236	557	24.9106
ciseli-custom	SNP	ti	HG002compoundhet	hetalt	89.3738	81.3472	99.1579	17.9620	471	108	471	4	2	50.0000
ghariani-varprowl	INDEL	D1_5	map_l150_m1_e0	het	89.3697	98.5477	81.7556	92.0269	475	7	475	106	19	17.9245
eyeh-varpipe	INDEL	D6_15	map_l250_m2_e0	*	89.3697	86.3636	92.5926	95.3287	19	3	25	2	2	100.0000
eyeh-varpipe	INDEL	D6_15	map_l250_m2_e1	*	89.3697	86.3636	92.5926	95.4082	19	3	25	2	2	100.0000

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