PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 682 683 684 685 686 687 688 689 690 ... 1720 1721 » 34251-34300 / 86044 show all
jpowers-varprowl	INDEL	D16_PLUS	map_l150_m1_e0	het	89.6552	92.8571	86.6667	98.0392	13	1	13	2	1	50.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e0	hetalt	89.6552	81.2500	100.0000	93.6982	39	9	38	0	0
ltrigg-rtg1	INDEL	I1_5	map_l250_m0_e0	het	89.6552	86.6667	92.8571	93.5185	13	2	13	1	0	0.0000
eyeh-varpipe	INDEL	D6_15	func_cds	het	89.6552	89.6552	89.6552	38.2979	26	3	26	3	3	100.0000
ckim-vqsr	INDEL	D16_PLUS	map_l100_m0_e0	*	89.6552	92.8571	86.6667	97.1910	26	2	26	4	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	map_l125_m2_e1	*	89.6552	92.8571	86.6667	97.2653	26	2	26	4	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	map_l150_m1_e0	het	89.6552	92.8571	86.6667	96.5675	13	1	13	2	0	0.0000
dgrover-gatk	INDEL	I6_15	map_l150_m1_e0	het	89.6552	86.6667	92.8571	95.5128	13	2	13	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l150_m2_e0	het	89.6552	86.6667	92.8571	95.9064	13	2	13	1	1	100.0000
gduggal-bwafb	INDEL	D16_PLUS	map_l150_m2_e0	het	89.6552	81.2500	100.0000	85.5556	13	3	13	0	0
gduggal-bwafb	INDEL	D16_PLUS	map_l150_m2_e1	het	89.6552	81.2500	100.0000	85.7143	13	3	13	0	0
gduggal-bwaplat	INDEL	I6_15	func_cds	homalt	89.6552	86.6667	92.8571	39.1304	13	2	13	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	*	89.6552	81.2500	100.0000	97.7586	13	3	13	0	0
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m0_e0	*	89.6552	92.8571	86.6667	95.1378	26	2	26	4	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l150_m1_e0	het	89.6552	92.8571	86.6667	94.4444	13	1	13	2	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	*	89.6552	81.2500	100.0000	97.8930	13	3	13	0	0
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	89.6552	84.7826	95.1220	62.7273	39	7	39	2	2	100.0000
jli-custom	INDEL	I16_PLUS	map_l125_m1_e0	*	89.6552	86.6667	92.8571	95.3642	13	2	13	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l125_m1_e0	*	89.6552	86.6667	92.8571	97.3231	13	2	13	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l125_m2_e0	*	89.6552	86.6667	92.8571	97.5986	13	2	13	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l125_m2_e1	*	89.6552	86.6667	92.8571	97.5986	13	2	13	1	0	0.0000
jlack-gatk	SNP	ti	map_l100_m0_e0	hetalt	89.6552	92.8571	86.6667	82.5581	13	1	13	2	2	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	*	89.6552	81.2500	100.0000	97.7193	13	3	13	0	0
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.6552	95.1220	84.7826	76.1039	78	4	78	14	14	100.0000
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	89.6552	86.6667	92.8571	96.6746	13	2	13	1	1	100.0000
cchapple-custom	INDEL	D16_PLUS	map_l125_m2_e1	*	89.6552	92.8571	86.6667	95.3125	26	2	26	4	0	0.0000
gduggal-bwavard	INDEL	D1_5	map_l150_m2_e1	het	89.6534	98.6590	82.1543	92.0895	515	7	511	111	13	11.7117
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	89.6510	84.0909	95.9984	54.3693	4958	938	2351	98	96	97.9592
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.6510	84.0909	95.9984	54.3693	4958	938	2351	98	96	97.9592
gduggal-snapvard	INDEL	I1_5	map_l100_m2_e1	het	89.6492	98.3951	82.3311	88.9834	797	13	1109	238	111	46.6387
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	89.6491	94.3079	85.4289	76.7105	729	44	727	124	122	98.3871
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.6468	92.1537	87.2727	64.8656	1151	98	1152	168	98	58.3333
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.6468	92.1537	87.2727	64.8656	1151	98	1152	168	98	58.3333
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	89.6438	88.9452	90.3535	42.9428	33712	4190	54335	5801	4069	70.1431
asubramanian-gatk	INDEL	*	map_l100_m2_e0	het	89.6413	84.6987	95.1965	90.0770	1954	353	1962	99	13	13.1313
anovak-vg	SNP	*	map_l125_m2_e0	homalt	89.6412	81.6863	99.3125	67.9435	14193	3182	14013	97	81	83.5052
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6330	82.7586	97.7528	84.0215	72	15	87	2	2	100.0000
ghariani-varprowl	INDEL	*	*	het	89.6326	98.5731	82.1789	64.2989	191361	2770	191449	41517	38150	91.8901
asubramanian-gatk	INDEL	I1_5	map_l125_m0_e0	het	89.6323	85.4167	94.2857	93.1800	164	28	165	10	0	0.0000
ckim-gatk	INDEL	D1_5	map_l250_m2_e0	het	89.6296	100.0000	81.2081	97.1866	121	0	121	28	1	3.5714
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	89.6250	81.2640	99.9038	61.4872	17796	4103	17660	17	16	94.1176
asubramanian-gatk	INDEL	*	map_l100_m2_e1	het	89.6239	84.6778	95.1836	90.0945	1984	359	1996	101	13	12.8713
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	*	89.6217	88.0000	91.3043	42.5000	22	3	21	2	0	0.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	89.6217	88.0000	91.3043	82.5095	44	6	42	4	2	50.0000
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	*	89.6217	88.0000	91.3043	43.9024	22	3	21	2	0	0.0000
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.6161	97.7492	82.7324	63.1469	304	7	436	91	90	98.9011
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.6150	96.8720	83.3696	61.8257	3066	99	3068	612	603	98.5294
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	89.6142	93.7888	85.7955	36.9176	151	10	151	25	25	100.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	89.6138	97.3501	83.0166	59.0666	698	19	699	143	81	56.6434
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.6122	99.4536	81.5431	79.4401	546	3	539	122	105	86.0656

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge