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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 680 681 682 683 684 685 686 687 688 ... 1720 1721 » 34151-34200 / 86044 show all
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.7959	100.0000	81.4815	87.6147	22	0	22	5	5	100.0000
anovak-vg	INDEL	D6_15	map_l150_m1_e0	homalt	89.7959	84.6154	95.6522	88.2653	22	4	22	1	1	100.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.7959	81.4815	100.0000	92.4528	22	5	20	0	0
jpowers-varprowl	INDEL	D1_5	*	*	89.7951	87.9294	91.7417	58.6226	129032	17713	128909	11604	11168	96.2427
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	89.7947	82.2323	98.8889	27.1255	361	78	356	4	4	100.0000
ckim-gatk	SNP	ti	map_l100_m1_e0	*	89.7917	82.4352	98.5900	77.1488	39512	8419	39505	565	68	12.0354
ghariani-varprowl	INDEL	*	map_l100_m0_e0	het	89.7886	97.7473	83.0283	91.0144	998	23	998	204	61	29.9020
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	89.7881	87.2659	92.4603	52.8972	233	34	233	19	12	63.1579
gduggal-bwaplat	INDEL	D16_PLUS	*	homalt	89.7870	82.0922	99.0734	63.7561	1389	303	1390	13	11	84.6154
anovak-vg	INDEL	D1_5	map_l100_m1_e0	homalt	89.7866	85.3041	94.7664	81.8274	505	87	507	28	27	96.4286
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.7777	98.5185	82.4615	65.1288	266	4	268	57	36	63.1579
qzeng-custom	INDEL	D6_15	segdup	*	89.7775	93.1937	86.6029	93.7519	178	13	181	28	9	32.1429
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	89.7763	83.1250	97.5845	71.8559	399	81	404	10	10	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	89.7762	88.0383	91.5842	74.4949	184	25	185	17	10	58.8235
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.7690	82.4242	98.5507	91.0273	136	29	136	2	0	0.0000
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	89.7688	92.5437	87.1556	81.5735	3922	316	4207	620	247	39.8387
anovak-vg	SNP	ti	map_l125_m1_e0	homalt	89.7681	81.8379	99.4000	64.4522	9039	2006	8946	54	49	90.7407
asubramanian-gatk	INDEL	D1_5	map_l125_m0_e0	het	89.7661	88.9855	90.5605	92.0254	307	38	307	32	1	3.1250
jlack-gatk	INDEL	D16_PLUS	map_siren	hetalt	89.7657	83.8710	96.5517	80.4054	26	5	28	1	0	0.0000
ndellapenna-hhga	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	89.7651	91.4894	88.1046	61.3701	2021	188	2022	273	186	68.1319
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.7626	98.2992	82.5903	81.8415	19246	333	19322	4073	56	1.3749
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.7626	98.2992	82.5903	81.8415	19246	333	19322	4073	56	1.3749
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.7592	95.7940	84.4397	65.4433	29198	1282	30682	5654	5190	91.7934
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.7592	95.7940	84.4397	65.4433	29198	1282	30682	5654	5190	91.7934
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	89.7585	88.5572	90.9928	62.2488	890	115	889	88	82	93.1818
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	89.7577	97.7169	82.9975	80.7748	856	20	659	135	120	88.8889
jmaeng-gatk	SNP	ti	map_l100_m1_e0	*	89.7569	82.4247	98.5209	77.3729	39507	8424	39500	593	63	10.6239
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.7564	96.6277	83.7975	65.1703	3639	127	3641	704	688	97.7273
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.7564	96.6277	83.7975	65.1703	3639	127	3641	704	688	97.7273
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	89.7542	85.0575	95.0000	99.9024	74	13	76	4	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.7527	83.5526	96.9466	91.3302	127	25	127	4	0	0.0000
mlin-fermikit	INDEL	I16_PLUS	HG002complexvar	homalt	89.7501	87.0550	92.6174	71.3186	269	40	276	22	21	95.4545
asubramanian-gatk	INDEL	*	map_l100_m0_e0	het	89.7495	86.5818	93.1579	91.0990	884	137	885	65	6	9.2308
asubramanian-gatk	INDEL	I1_5	map_l150_m2_e0	*	89.7493	83.4297	97.1047	92.9146	433	86	436	13	1	7.6923
asubramanian-gatk	INDEL	D1_5	map_l125_m1_e0	het	89.7485	86.7769	92.9308	90.5838	630	96	631	48	4	8.3333
ckim-gatk	INDEL	D16_PLUS	segdup	het	89.7436	100.0000	81.3953	97.3292	37	0	35	8	1	12.5000
gduggal-bwavard	INDEL	*	segdup	*	89.7413	89.8670	89.6160	95.3552	2297	259	2287	265	217	81.8868
gduggal-snapvard	INDEL	I1_5	map_l100_m1_e0	het	89.7380	98.4556	82.4387	88.3144	765	12	1075	229	105	45.8515
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.7357	81.3824	100.0000	40.5910	730	167	764	0	0
gduggal-snapvard	INDEL	I1_5	HG002complexvar	*	89.7354	89.2273	90.2494	52.3644	29768	3594	28665	3097	2248	72.5864
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	89.7351	86.0317	93.7716	60.6535	542	88	542	36	19	52.7778
ghariani-varprowl	INDEL	D1_5	map_l150_m2_e0	het	89.7345	98.6381	82.3052	92.4436	507	7	507	109	20	18.3486
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	89.7334	83.3333	97.1983	70.7071	455	91	451	13	8	61.5385
ciseli-custom	SNP	*	map_siren	*	89.7321	87.9989	91.5349	59.0239	128679	17549	128115	11848	2967	25.0422
gduggal-snapvard	INDEL	I1_5	map_l150_m2_e1	*	89.7320	94.9153	85.0856	90.9633	504	27	696	122	45	36.8852
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m2_e0	*	89.7297	92.2222	87.3684	93.0250	83	7	83	12	2	16.6667
ckim-gatk	INDEL	D16_PLUS	map_l100_m2_e0	*	89.7297	92.2222	87.3684	95.8533	83	7	83	12	4	33.3333
ckim-isaac	INDEL	D6_15	segdup	het	89.7285	86.9565	92.6829	92.5319	80	12	76	6	6	100.0000

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