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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 674 675 676 677 678 679 680 681 682 ... 1720 1721 » 33851-33900 / 86044 show all
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	90.2020	86.7117	93.9850	69.4253	385	59	375	24	5	20.8333
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	90.2013	82.6531	99.2669	29.5455	648	136	677	5	5	100.0000
ckim-isaac	INDEL	D1_5	map_siren	het	90.2008	83.4870	98.0888	79.1671	1901	376	1899	37	14	37.8378
ckim-vqsr	INDEL	D1_5	map_l250_m2_e1	het	90.1961	94.2623	86.4662	97.5411	115	7	115	18	1	5.5556
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1961	82.1429	100.0000	59.6491	69	15	69	0	0
qzeng-custom	INDEL	D1_5	map_siren	hetalt	90.1961	82.1429	100.0000	94.0476	69	15	5	0	0
astatham-gatk	INDEL	I16_PLUS	map_l100_m1_e0	*	90.1961	88.4615	92.0000	95.7627	23	3	23	2	0	0.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.1961	100.0000	82.1429	87.8261	23	0	23	5	4	80.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	90.1961	82.1429	100.0000	54.1667	23	5	22	0	0
ltrigg-rtg1	INDEL	I6_15	map_l150_m2_e1	*	90.1961	85.1852	95.8333	91.8089	23	4	23	1	0	0.0000
cchapple-custom	INDEL	I6_15	map_l150_m2_e1	*	90.1961	85.1852	95.8333	95.4111	23	4	23	1	0	0.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	het	90.1961	85.1852	95.8333	97.7941	23	4	23	1	1	100.0000
ghariani-varprowl	INDEL	I1_5	map_l250_m0_e0	*	90.1961	95.8333	85.1852	98.5842	23	1	23	4	1	25.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.1961	100.0000	82.1429	88.0342	23	0	23	5	4	80.0000
gduggal-bwaplat	INDEL	I6_15	segdup	het	90.1961	83.1325	98.5714	96.2325	69	14	69	1	1	100.0000
ckim-isaac	SNP	*	HG002compoundhet	homalt	90.1933	82.4430	99.5521	29.8507	8889	1893	8890	40	35	87.5000
astatham-gatk	SNP	tv	map_l125_m0_e0	het	90.1921	82.6403	99.2629	82.5538	3637	764	3636	27	5	18.5185
ckim-isaac	INDEL	I1_5	HG002compoundhet	hetalt	90.1858	82.6071	99.2955	37.7647	9233	1944	9162	65	55	84.6154
ghariani-varprowl	INDEL	*	map_l150_m2_e0	het	90.1781	97.7925	83.6638	93.5954	886	20	886	173	49	28.3237
jlack-gatk	INDEL	*	map_l125_m0_e0	het	90.1770	97.4446	83.9181	93.0825	572	15	574	110	2	1.8182
qzeng-custom	INDEL	D1_5	map_l100_m2_e1	*	90.1766	83.9608	97.3863	87.9176	1628	311	1863	50	36	72.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	90.1750	93.3148	87.2396	48.1081	335	24	335	49	47	95.9184
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.1734	95.1220	85.7143	76.3021	78	4	78	13	13	100.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.1734	87.6404	92.8571	52.1822	234	33	234	18	13	72.2222
egarrison-hhga	INDEL	D6_15	map_l100_m2_e1	*	90.1715	88.0000	92.4528	85.4555	242	33	245	20	12	60.0000
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	90.1687	84.9804	96.0316	53.5294	7146	1263	7163	296	207	69.9324
gduggal-snapfb	INDEL	*	map_l250_m2_e1	het	90.1679	89.0995	91.2621	94.7636	188	23	188	18	3	16.6667
ghariani-varprowl	INDEL	*	map_l125_m0_e0	het	90.1652	97.6150	83.7719	93.3586	573	14	573	111	27	24.3243
raldana-dualsentieon	INDEL	I1_5	map_l250_m1_e0	het	90.1639	91.6667	88.7097	95.3662	55	5	55	7	0	0.0000
ckim-dragen	INDEL	D16_PLUS	segdup	*	90.1639	94.8276	85.9375	97.1806	55	3	55	9	3	33.3333
gduggal-snapvard	INDEL	D1_5	segdup	*	90.1625	92.8377	87.6372	94.9594	1024	79	1198	169	138	81.6568
asubramanian-gatk	INDEL	*	map_l150_m2_e0	*	90.1581	85.7955	94.9883	97.8029	1208	200	1213	64	7	10.9375
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.1566	82.3347	99.6207	65.0618	797	171	788	3	3	100.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m2_e1	*	90.1554	89.6907	90.6250	93.3194	87	10	87	9	2	22.2222
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1510	90.4439	89.8599	72.3577	3199	338	3208	362	144	39.7790
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	90.1456	99.3056	82.5328	68.5151	572	4	567	120	100	83.3333
gduggal-bwaplat	SNP	tv	tech_badpromoters	homalt	90.1408	82.0513	100.0000	58.4416	32	7	32	0	0
hfeng-pmm2	INDEL	D16_PLUS	map_siren	homalt	90.1408	94.1176	86.4865	92.8295	32	2	32	5	0	0.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1408	82.0513	100.0000	60.9756	32	7	32	0	0
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1408	82.0513	100.0000	61.4458	32	7	32	0	0
gduggal-snapplat	SNP	tv	tech_badpromoters	homalt	90.1408	82.0513	100.0000	62.3529	32	7	32	0	0
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	90.1406	89.3302	90.9658	70.1878	5735	685	5689	565	335	59.2920
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	90.1406	89.3302	90.9658	70.1878	5735	685	5689	565	335	59.2920
asubramanian-gatk	INDEL	*	map_l150_m2_e1	*	90.1401	85.6845	95.0845	97.7994	1233	206	1238	64	7	10.9375
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	het	90.1398	87.7647	92.6471	86.3079	746	104	693	55	49	89.0909
gduggal-bwavard	SNP	*	map_l250_m1_e0	*	90.1392	97.5353	83.7857	91.6472	7044	178	6976	1350	42	3.1111
ndellapenna-hhga	INDEL	D6_15	map_l100_m2_e1	*	90.1374	89.0909	91.2088	85.8549	245	30	249	24	12	50.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	90.1333	91.3632	88.9362	70.2437	878	83	836	104	100	96.1538
gduggal-snapplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	90.1322	86.5088	94.0725	74.1670	24187	3772	24250	1528	165	10.7984
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1316	82.0359	100.0000	68.2540	137	30	140	0	0

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