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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 666 667 668 669 670 671 672 673 674 ... 1720 1721 » 33451-33500 / 86044 show all
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.6780	86.2903	95.5357	87.6243	107	17	107	5	3	60.0000
jlack-gatk	INDEL	*	map_l250_m2_e0	*	90.6780	96.9789	85.1459	97.0399	321	10	321	56	4	7.1429
gduggal-snapvard	INDEL	I1_5	map_l100_m0_e0	*	90.6741	94.8435	86.8559	87.7132	515	28	826	125	46	36.8000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.6735	97.5949	84.6689	62.9273	2313	57	2314	419	412	98.3294
ghariani-varprowl	INDEL	*	func_cds	het	90.6725	97.6636	84.6154	54.4280	209	5	209	38	29	76.3158
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.6706	100.0000	82.9333	68.7239	311	0	311	64	63	98.4375
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	90.6695	93.1741	88.2960	82.0927	3863	283	4021	533	266	49.9062
jpowers-varprowl	SNP	tv	map_l250_m0_e0	*	90.6683	93.9869	87.5761	95.2078	719	46	719	102	12	11.7647
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	90.6674	96.3091	85.6501	61.6361	3627	139	3623	607	603	99.3410
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	90.6674	96.3091	85.6501	61.6361	3627	139	3623	607	603	99.3410
gduggal-snapvard	INDEL	I1_5	map_l100_m2_e1	*	90.6674	93.3333	88.1496	86.2733	1302	93	1815	244	114	46.7213
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.6667	82.9268	100.0000	88.6861	34	7	31	0	0
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	90.6667	82.9268	100.0000	53.4653	272	56	47	0	0
qzeng-custom	INDEL	D1_5	map_l100_m2_e0	homalt	90.6644	83.7971	98.7578	79.4118	512	99	636	8	8	100.0000
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	90.6611	90.9091	90.4145	54.4274	340	34	349	37	21	56.7568
ndellapenna-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	90.6589	89.8785	91.4530	77.6930	222	25	214	20	12	60.0000
rpoplin-dv42	INDEL	D16_PLUS	HG002compoundhet	hetalt	90.6567	83.2469	99.5146	24.3343	1605	323	1640	8	8	100.0000
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	90.6525	87.0027	94.6221	51.2057	984	147	651	37	36	97.2973
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	90.6524	84.2181	98.1513	37.9562	587	110	584	11	11	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	90.6486	83.4722	99.1749	87.8994	601	119	601	5	3	60.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	90.6475	90.0000	91.3043	86.0606	45	5	42	4	2	50.0000
gduggal-bwavard	SNP	*	map_l250_m2_e1	*	90.6461	97.4959	84.6957	92.1274	7787	200	7709	1393	45	3.2304
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	90.6418	89.6396	91.6667	81.6483	199	23	198	18	15	83.3333
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	90.6416	91.6129	89.6907	78.8210	142	13	174	20	19	95.0000
qzeng-custom	INDEL	D6_15	*	*	90.6408	92.3501	88.9936	51.4321	24096	1996	25413	3143	1242	39.5164
gduggal-bwavard	INDEL	*	map_l150_m2_e0	*	90.6383	95.5256	86.2268	91.9474	1345	63	1346	215	47	21.8605
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.6343	97.3404	84.7926	70.8333	183	5	184	33	32	96.9697
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	90.6327	87.6737	93.7984	45.3197	1451	204	1452	96	90	93.7500
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	90.6304	83.9615	98.4500	76.1644	2094	400	2096	33	8	24.2424
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	90.6252	83.1422	99.5885	23.9833	725	147	726	3	3	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	map_siren	homalt	90.6250	85.2941	96.6667	84.5361	29	5	29	1	1	100.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	90.6250	82.8571	100.0000	80.8219	29	6	14	0	0
ckim-isaac	INDEL	D6_15	*	hetalt	90.6237	83.9246	98.4851	33.2460	6860	1314	7281	112	99	88.3929
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.6233	84.1577	98.1651	57.4219	1089	205	107	2	2	100.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	90.6197	83.5052	99.0596	65.6620	324	64	316	3	3	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.6188	83.4586	99.1228	73.6111	111	22	113	1	0	0.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	90.6149	83.1470	99.5567	28.0153	1041	211	1123	5	5	100.0000
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.6109	85.8533	95.9267	79.8715	13236	2181	4239	180	178	98.8889
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.6103	83.5498	98.9744	59.1195	386	76	386	4	4	100.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m2_e0	*	90.6077	91.1111	90.1099	93.5046	82	8	82	9	2	22.2222
cchapple-custom	INDEL	C1_5	HG002complexvar	het	90.6065	85.7143	96.0910	77.9776	6	1	1647	67	24	35.8209
ciseli-custom	INDEL	I1_5	segdup	het	90.6052	93.4944	87.8893	95.0934	503	35	508	70	50	71.4286
gduggal-bwavard	SNP	*	map_l250_m2_e0	*	90.6036	97.5016	84.6171	92.0596	7688	197	7613	1384	44	3.1792
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	90.6015	98.9733	83.5355	66.2376	482	5	482	95	90	94.7368
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	90.6005	89.5230	91.7043	43.8461	16346	1913	17079	1545	1043	67.5081
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.6003	88.1579	93.1818	89.0638	134	18	123	9	1	11.1111
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	90.6002	85.2941	96.6102	66.8539	58	10	57	2	2	100.0000
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	90.5999	98.1413	84.1348	64.8517	2904	55	2922	551	27	4.9002
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	90.5987	83.2905	99.3127	36.1667	2268	455	2312	16	16	100.0000
cchapple-custom	INDEL	I1_5	map_l250_m1_e0	het	90.5983	88.3333	92.9825	96.4574	53	7	53	4	0	0.0000

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