PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33301-33350 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.3221 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 97.2067 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9091 | 84.3373 | 98.5915 | 47.0149 | 70 | 13 | 70 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 99.1482 | 5 | 1 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 97.8481 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 97.8589 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | homalt | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 10 | 2 | 10 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 90.9091 | 90.9091 | 90.9091 | 97.2569 | 10 | 1 | 10 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.8908 | 5 | 1 | 7 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.0952 | 5 | 1 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 77.1186 | 25 | 5 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 92.1905 | 40 | 8 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9091 | 87.7193 | 94.3396 | 99.4917 | 50 | 7 | 50 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 92.3858 | 25 | 0 | 25 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.3333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4239 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6645 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6695 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.9091 | 91.6667 | 90.1639 | 98.1015 | 55 | 5 | 55 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.0476 | 5 | 1 | 5 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.6364 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 90.9078 | 83.8350 | 99.2840 | 42.0470 | 752 | 145 | 832 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9072 | 83.7989 | 99.3333 | 37.2385 | 150 | 29 | 149 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 90.9054 | 87.1795 | 94.9640 | 88.1323 | 1054 | 155 | 1056 | 56 | 6 | 10.7143 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9027 | 83.6009 | 99.6021 | 25.4941 | 729 | 143 | 751 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.9017 | 87.1048 | 95.0448 | 58.1886 | 1405 | 208 | 2014 | 105 | 83 | 79.0476 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9015 | 84.6774 | 98.1132 | 99.9441 | 105 | 19 | 104 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.9004 | 97.5410 | 85.1064 | 84.7403 | 119 | 3 | 120 | 21 | 21 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8989 | 84.9624 | 97.7273 | 86.2069 | 113 | 20 | 129 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.8951 | 98.2838 | 84.5396 | 75.5036 | 1718 | 30 | 1717 | 314 | 68 | 21.6561 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.8942 | 97.5031 | 85.1244 | 74.2945 | 9450 | 242 | 9545 | 1668 | 246 | 14.7482 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | het | 90.8928 | 93.6842 | 88.2629 | 95.8219 | 178 | 12 | 188 | 25 | 2 | 8.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 90.8918 | 96.5726 | 85.8423 | 90.8419 | 479 | 17 | 479 | 79 | 10 | 12.6582 | |
| ghariani-varprowl | INDEL | * | map_siren | * | 90.8910 | 92.7126 | 89.1397 | 90.4253 | 6870 | 540 | 6870 | 837 | 449 | 53.6440 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | * | 90.8863 | 84.3874 | 98.4697 | 61.0933 | 64926 | 12012 | 64799 | 1007 | 684 | 67.9245 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.8852 | 91.7343 | 90.0517 | 74.0181 | 1243 | 112 | 1394 | 154 | 131 | 85.0649 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | * | homalt | 90.8801 | 84.1132 | 98.8312 | 57.2595 | 5321 | 1005 | 5327 | 63 | 57 | 90.4762 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.8783 | 90.7300 | 91.0272 | 61.1646 | 783 | 80 | 771 | 76 | 71 | 93.4211 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 90.8745 | 98.7603 | 84.1549 | 90.4911 | 717 | 9 | 717 | 135 | 26 | 19.2593 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8723 | 85.5204 | 96.9388 | 91.1030 | 189 | 32 | 190 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | HG002compoundhet | homalt | 90.8698 | 84.7107 | 97.9946 | 41.8088 | 2870 | 518 | 2541 | 52 | 38 | 73.0769 | |
| gduggal-bwaplat | SNP | ti | map_siren | * | 90.8656 | 83.6301 | 99.4716 | 68.7099 | 83927 | 16428 | 83958 | 446 | 118 | 26.4574 | |