PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3251-3300 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5915 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5915 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9751 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9857 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6933 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9405 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.7273 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9141 | 11 | 0 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7897 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3769 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9648 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8854 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3590 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 80.5621 | 657 | 0 | 657 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0525 | 369 | 0 | 369 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9919 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.6411 | 1330 | 0 | 1330 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9960 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9946 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9554 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2647 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 56.5657 | 43 | 0 | 43 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 53.9683 | 29 | 0 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8873 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.4252 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 2 | 0 | 2 | 0 | 0 | ||