PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32801-32850 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.2721 | 93.5191 | 89.1304 | 80.4771 | 10101 | 700 | 10578 | 1290 | 640 | 49.6124 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | * | 91.2711 | 90.0302 | 92.5466 | 95.8100 | 298 | 33 | 298 | 24 | 6 | 25.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2698 | 88.4298 | 94.2982 | 65.0842 | 214 | 28 | 215 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | homalt | 91.2669 | 85.0119 | 98.5155 | 76.6062 | 1072 | 189 | 1460 | 22 | 18 | 81.8182 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2661 | 86.8078 | 96.2071 | 67.4824 | 1599 | 243 | 1598 | 63 | 54 | 85.7143 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2631 | 87.6866 | 95.1439 | 62.7595 | 470 | 66 | 529 | 27 | 23 | 85.1852 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2624 | 91.6185 | 90.9091 | 64.6231 | 317 | 29 | 320 | 32 | 16 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.2621 | 88.6792 | 94.0000 | 70.4142 | 47 | 6 | 47 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.2621 | 100.0000 | 83.9286 | 99.8242 | 1 | 0 | 141 | 27 | 26 | 96.2963 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.2606 | 98.3425 | 85.1301 | 84.6110 | 356 | 6 | 229 | 40 | 38 | 95.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.2606 | 98.3425 | 85.1301 | 84.5313 | 356 | 6 | 229 | 40 | 38 | 95.0000 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | het | 91.2586 | 96.8794 | 86.2542 | 81.2481 | 27506 | 886 | 27183 | 4332 | 306 | 7.0637 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | het | 91.2581 | 98.8312 | 84.7630 | 90.8034 | 761 | 9 | 751 | 135 | 18 | 13.3333 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2551 | 87.6404 | 95.1807 | 72.6974 | 78 | 11 | 79 | 4 | 4 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l125_m2_e0 | * | 91.2512 | 84.0571 | 99.7920 | 76.0047 | 25434 | 4824 | 25430 | 53 | 29 | 54.7170 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | het | 91.2506 | 84.5586 | 99.0928 | 85.6322 | 2404 | 439 | 2403 | 22 | 3 | 13.6364 | |
| astatham-gatk | SNP | ti | map_l125_m2_e1 | * | 91.2494 | 84.0525 | 99.7941 | 76.0425 | 25694 | 4875 | 25690 | 53 | 29 | 54.7170 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.2469 | 84.8746 | 98.6537 | 45.5252 | 9747 | 1737 | 9746 | 133 | 101 | 75.9398 | |
| astatham-gatk | SNP | * | map_l125_m1_e0 | * | 91.2465 | 84.0779 | 99.7513 | 74.8310 | 38110 | 7217 | 38104 | 95 | 43 | 45.2632 | |
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | homalt | 91.2452 | 85.0041 | 98.4754 | 75.7601 | 1043 | 184 | 1421 | 22 | 18 | 81.8182 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.2409 | 95.9430 | 86.9781 | 77.5847 | 875 | 37 | 875 | 131 | 121 | 92.3664 | |
| gduggal-bwaplat | INDEL | I6_15 | * | homalt | 91.2395 | 85.5426 | 97.7493 | 57.4509 | 5337 | 902 | 5342 | 123 | 103 | 83.7398 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | homalt | 91.2357 | 83.9839 | 99.8583 | 72.7044 | 5637 | 1075 | 5637 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 91.2346 | 85.1608 | 98.2412 | 87.9589 | 1165 | 203 | 1173 | 21 | 4 | 19.0476 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | het | 91.2339 | 97.9403 | 85.3870 | 92.0826 | 1379 | 29 | 1379 | 236 | 77 | 32.6271 | |
| ghariani-varprowl | INDEL | D1_5 | segdup | * | 91.2316 | 92.0218 | 90.4550 | 95.5776 | 1015 | 88 | 1014 | 107 | 65 | 60.7477 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.2302 | 99.3206 | 84.3587 | 81.4184 | 14472 | 99 | 13726 | 2545 | 73 | 2.8684 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.2302 | 99.3206 | 84.3587 | 81.4184 | 14472 | 99 | 13726 | 2545 | 73 | 2.8684 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.2281 | 100.0000 | 83.8710 | 92.0716 | 25 | 0 | 26 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 84.0000 | 26 | 5 | 28 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 91.2281 | 96.2963 | 86.6667 | 94.5055 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 95.1923 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 28 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 97.1936 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 92.1622 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 91.2281 | 86.6667 | 96.2963 | 79.0698 | 26 | 4 | 26 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.4474 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.5556 | 26 | 5 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | hetalt | 91.2281 | 83.8710 | 100.0000 | 91.4516 | 104 | 20 | 106 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.9270 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 91.2281 | 89.6552 | 92.8571 | 92.4866 | 78 | 9 | 78 | 6 | 2 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.4196 | 26 | 5 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | het | 91.2276 | 84.7368 | 98.7952 | 90.9635 | 161 | 29 | 164 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.2274 | 96.9697 | 86.1272 | 74.9275 | 448 | 14 | 447 | 72 | 72 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.2260 | 85.8491 | 97.3214 | 84.7411 | 91 | 15 | 109 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.2250 | 84.5061 | 99.1045 | 23.0475 | 3927 | 720 | 3984 | 36 | 30 | 83.3333 | |
| gduggal-bwaplat | SNP | tv | map_siren | het | 91.2244 | 84.4245 | 99.2157 | 78.7828 | 24153 | 4456 | 24161 | 191 | 46 | 24.0838 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 91.2220 | 89.6785 | 92.8196 | 89.5670 | 530 | 61 | 530 | 41 | 4 | 9.7561 | |