PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3201-3250 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.0000 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9717 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9801 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8485 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9337 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4426 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5157 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.5806 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8797 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9634 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9981 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.5807 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6572 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1304 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.4545 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8487 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8445 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||