PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32251-32300 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | tech_badpromoters | * | 91.8033 | 89.1720 | 94.5946 | 70.5179 | 140 | 17 | 140 | 8 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 91.8033 | 84.8485 | 100.0000 | 90.6040 | 28 | 5 | 28 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | segdup | * | 91.8033 | 96.5517 | 87.5000 | 96.9711 | 56 | 2 | 56 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 98.0000 | 56 | 4 | 56 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.8033 | 84.8485 | 100.0000 | 47.2906 | 308 | 55 | 321 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 93.9216 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.8033 | 93.3333 | 90.3226 | 94.5899 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.8033 | 93.3333 | 90.3226 | 94.7189 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.6427 | 28 | 5 | 29 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 94.2857 | 28 | 5 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | het | 91.8033 | 85.7143 | 98.8235 | 86.8787 | 6 | 1 | 420 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | het | 91.8033 | 84.8485 | 100.0000 | 92.3483 | 28 | 5 | 29 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 94.3038 | 28 | 5 | 9 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l150_m0_e0 | het | 91.7997 | 98.3753 | 86.0480 | 89.1426 | 7811 | 129 | 7808 | 1266 | 94 | 7.4250 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | het | 91.7986 | 96.5945 | 87.4564 | 82.3224 | 18437 | 650 | 18295 | 2624 | 207 | 7.8887 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7959 | 97.7681 | 86.5114 | 40.4602 | 3373 | 77 | 3380 | 527 | 26 | 4.9336 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | * | 91.7958 | 89.0029 | 94.7697 | 85.0160 | 9712 | 1200 | 9712 | 536 | 286 | 53.3582 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | homalt | 91.7943 | 85.3141 | 99.3397 | 61.4498 | 23481 | 4042 | 23170 | 154 | 133 | 86.3636 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | het | 91.7899 | 96.1538 | 87.8049 | 95.9883 | 75 | 3 | 72 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | het | 91.7878 | 98.1413 | 86.2069 | 96.5587 | 528 | 10 | 525 | 84 | 56 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.7876 | 99.0041 | 85.5516 | 65.0041 | 2187 | 22 | 2179 | 368 | 361 | 98.0978 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 91.7875 | 99.0358 | 85.5279 | 90.3635 | 719 | 7 | 721 | 122 | 5 | 4.0984 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.7867 | 95.1821 | 88.6251 | 90.1491 | 810 | 41 | 896 | 115 | 26 | 22.6087 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.7864 | 97.0356 | 87.0760 | 55.5089 | 8118 | 248 | 8112 | 1204 | 1184 | 98.3389 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | * | 91.7859 | 94.3996 | 89.3130 | 93.6193 | 1989 | 118 | 1989 | 238 | 77 | 32.3529 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.7858 | 86.9565 | 97.1831 | 21.9780 | 140 | 21 | 138 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.7828 | 89.8112 | 93.8428 | 47.3895 | 19983 | 2267 | 20728 | 1360 | 1094 | 80.4412 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 91.7822 | 88.7139 | 95.0704 | 56.7337 | 676 | 86 | 675 | 35 | 23 | 65.7143 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.7821 | 85.1027 | 99.5992 | 26.0741 | 497 | 87 | 497 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.7813 | 89.3878 | 94.3066 | 53.8098 | 657 | 78 | 646 | 39 | 38 | 97.4359 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.7813 | 89.3878 | 94.3066 | 53.8721 | 657 | 78 | 646 | 39 | 38 | 97.4359 | |
| jpowers-varprowl | INDEL | * | func_cds | * | 91.7808 | 90.3371 | 93.2715 | 40.6336 | 402 | 43 | 402 | 29 | 28 | 96.5517 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.7798 | 92.5682 | 91.0048 | 77.6662 | 984 | 79 | 951 | 94 | 57 | 60.6383 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7792 | 85.7399 | 98.7338 | 51.3537 | 3349 | 557 | 3353 | 43 | 4 | 9.3023 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.7774 | 93.1267 | 90.4666 | 45.7994 | 691 | 51 | 4033 | 425 | 374 | 88.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7765 | 90.9091 | 92.6606 | 88.7745 | 100 | 10 | 101 | 8 | 8 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | * | 91.7764 | 97.3933 | 86.7721 | 92.6439 | 2578 | 69 | 2578 | 393 | 24 | 6.1069 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.7694 | 88.7681 | 94.9807 | 88.6104 | 245 | 31 | 246 | 13 | 6 | 46.1538 | |
| gduggal-snapvard | SNP | ti | tech_badpromoters | het | 91.7647 | 88.6364 | 95.1220 | 57.2917 | 39 | 5 | 39 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.7626 | 87.4564 | 96.5147 | 48.4959 | 5013 | 719 | 5040 | 182 | 91 | 50.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | het | 91.7565 | 91.2612 | 92.2573 | 87.5714 | 6339 | 607 | 6339 | 532 | 282 | 53.0075 | |
| ckim-isaac | INDEL | I1_5 | map_siren | het | 91.7548 | 86.3772 | 97.8466 | 80.2288 | 1452 | 229 | 1454 | 32 | 7 | 21.8750 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | * | 91.7545 | 85.9392 | 98.4139 | 61.1958 | 28115 | 4600 | 28045 | 452 | 321 | 71.0177 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7526 | 86.4078 | 97.8022 | 85.8034 | 178 | 28 | 178 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7513 | 98.3837 | 85.9566 | 77.5029 | 4687 | 77 | 4713 | 770 | 56 | 7.2727 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | het | 91.7507 | 86.6667 | 97.4684 | 83.5588 | 117 | 18 | 154 | 4 | 1 | 25.0000 | |