PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32051-32100 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.0000 | 88.4615 | 95.8333 | 93.6000 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.0000 | 88.4615 | 95.8333 | 93.6675 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | * | 91.9971 | 85.7143 | 99.2739 | 88.1471 | 6 | 1 | 957 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | * | 91.9970 | 89.4737 | 94.6667 | 86.9110 | 68 | 8 | 71 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.9932 | 85.7143 | 99.2647 | 63.0435 | 144 | 24 | 135 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | het | 91.9911 | 86.1654 | 98.6616 | 46.5235 | 573 | 92 | 516 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.9908 | 86.2661 | 98.5294 | 74.4040 | 201 | 32 | 201 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.9906 | 94.9155 | 89.2405 | 50.9643 | 16913 | 906 | 43453 | 5239 | 3113 | 59.4197 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.9906 | 90.0000 | 94.0711 | 55.8464 | 243 | 27 | 238 | 15 | 3 | 20.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9902 | 92.8571 | 91.1392 | 82.1469 | 117 | 9 | 144 | 14 | 13 | 92.8571 | |
| astatham-gatk | SNP | * | map_l100_m2_e0 | * | 91.9897 | 85.2942 | 99.8259 | 70.5601 | 63087 | 10877 | 63076 | 110 | 52 | 47.2727 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9883 | 99.2888 | 85.6879 | 49.6867 | 7399 | 53 | 7430 | 1241 | 43 | 3.4650 | |
| eyeh-varpipe | INDEL | D6_15 | * | het | 91.9882 | 92.1325 | 91.8444 | 46.7075 | 10680 | 912 | 10079 | 895 | 860 | 96.0894 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9881 | 86.7537 | 97.8947 | 61.8780 | 465 | 71 | 465 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | het | 91.9870 | 91.5747 | 92.4029 | 88.3430 | 6641 | 611 | 6641 | 546 | 288 | 52.7473 | |
| jlack-gatk | INDEL | I6_15 | map_siren | het | 91.9861 | 92.3077 | 91.6667 | 87.8583 | 132 | 11 | 132 | 12 | 1 | 8.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.9839 | 85.7475 | 99.1986 | 31.0197 | 1107 | 184 | 1114 | 9 | 9 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9826 | 95.9549 | 88.3261 | 82.4603 | 2894 | 122 | 2860 | 378 | 43 | 11.3757 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.9813 | 85.4583 | 99.5823 | 47.6985 | 3338 | 568 | 3338 | 14 | 1 | 7.1429 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.9790 | 96.8591 | 87.5672 | 69.0278 | 1141 | 37 | 1141 | 162 | 155 | 95.6790 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.9743 | 90.3292 | 93.6805 | 71.4710 | 58200 | 6231 | 60215 | 4062 | 3944 | 97.0950 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.9743 | 92.1019 | 91.8470 | 57.2556 | 26028 | 2232 | 27420 | 2434 | 1757 | 72.1857 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 91.9717 | 89.1304 | 95.0000 | 84.6743 | 41 | 5 | 38 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | homalt | 91.9708 | 85.1351 | 100.0000 | 31.1475 | 63 | 11 | 84 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.9665 | 85.1278 | 100.0000 | 30.7314 | 1099 | 192 | 1127 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 91.9654 | 90.5455 | 93.4307 | 84.2075 | 249 | 26 | 256 | 18 | 11 | 61.1111 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 91.9653 | 86.1570 | 98.6135 | 44.3408 | 5116 | 822 | 5121 | 72 | 60 | 83.3333 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | het | 91.9609 | 87.1795 | 97.2973 | 46.3768 | 34 | 5 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 91.9586 | 87.5042 | 96.8908 | 75.6471 | 5196 | 742 | 2680 | 86 | 85 | 98.8372 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9578 | 85.8844 | 98.9556 | 88.3338 | 1515 | 249 | 1516 | 16 | 4 | 25.0000 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | het | 91.9563 | 98.9477 | 85.8877 | 83.2329 | 7146 | 76 | 7145 | 1174 | 61 | 5.1959 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9540 | 90.2256 | 93.7500 | 86.9919 | 120 | 13 | 105 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.9540 | 86.9565 | 97.5610 | 48.7500 | 40 | 6 | 40 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.7526 | 40 | 7 | 40 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 91.9540 | 99.1736 | 85.7143 | 97.3953 | 120 | 1 | 120 | 20 | 1 | 5.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.5789 | 40 | 7 | 40 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.5789 | 40 | 7 | 40 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 86.2687 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9498 | 85.6224 | 99.2869 | 60.0604 | 9189 | 1543 | 9190 | 66 | 25 | 37.8788 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | homalt | 91.9496 | 85.0988 | 100.0000 | 74.0535 | 3358 | 588 | 3358 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_siren | hetalt | 91.9492 | 87.5000 | 96.8750 | 79.3548 | 63 | 9 | 62 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | het | 91.9483 | 86.3636 | 98.3051 | 92.7160 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 91.9469 | 85.2839 | 99.7392 | 69.0289 | 1472 | 254 | 1530 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | tv | map_siren | het | 91.9469 | 86.2561 | 98.4416 | 72.2639 | 24677 | 3932 | 24636 | 390 | 264 | 67.6923 | |