PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31251-31300 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 92.6175 | 98.6053 | 87.3153 | 91.1605 | 707 | 10 | 709 | 103 | 4 | 3.8835 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 52.0833 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 54.6053 | 69 | 11 | 69 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | het | 92.6168 | 93.8422 | 91.4229 | 92.4770 | 1844 | 121 | 1844 | 173 | 34 | 19.6532 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | homalt | 92.6163 | 87.3181 | 98.5989 | 84.8461 | 420 | 61 | 563 | 8 | 6 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6154 | 86.5925 | 99.5389 | 29.1978 | 1479 | 229 | 1511 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.6123 | 93.8272 | 91.4286 | 75.5814 | 76 | 5 | 96 | 9 | 3 | 33.3333 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | * | 92.6122 | 96.6292 | 88.9159 | 89.2090 | 1118 | 39 | 1099 | 137 | 20 | 14.5985 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6115 | 86.6324 | 99.4771 | 37.4276 | 2359 | 364 | 2473 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | het | 92.6096 | 86.5385 | 99.5968 | 76.3020 | 495 | 77 | 494 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6089 | 86.4097 | 99.7664 | 61.6487 | 426 | 67 | 427 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 92.6076 | 88.2353 | 97.4359 | 91.4191 | 75 | 10 | 76 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | * | 92.6068 | 92.3077 | 92.9078 | 92.7357 | 132 | 11 | 131 | 10 | 2 | 20.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.6051 | 97.9373 | 87.8236 | 56.1886 | 11063 | 233 | 11468 | 1590 | 1468 | 92.3270 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.6045 | 86.2275 | 100.0000 | 68.7898 | 144 | 23 | 147 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | HG002compoundhet | het | 92.6044 | 97.8749 | 87.8724 | 79.5506 | 4007 | 87 | 3775 | 521 | 513 | 98.4645 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6036 | 86.2259 | 100.0000 | 47.3344 | 313 | 50 | 326 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | * | * | 92.6024 | 87.3765 | 98.4933 | 47.8680 | 5572 | 805 | 5491 | 84 | 71 | 84.5238 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6020 | 89.7937 | 95.5916 | 62.8768 | 1654 | 188 | 1648 | 76 | 46 | 60.5263 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | het | 92.6002 | 97.4203 | 88.2346 | 79.7371 | 15370 | 407 | 15314 | 2042 | 140 | 6.8560 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.5975 | 97.2222 | 88.3929 | 44.7887 | 210 | 6 | 693 | 91 | 41 | 45.0549 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.5950 | 86.3019 | 99.8782 | 37.9441 | 2350 | 373 | 2460 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.5948 | 89.9415 | 95.4094 | 77.7594 | 769 | 86 | 769 | 37 | 3 | 8.1081 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.5939 | 86.2091 | 100.0000 | 89.7909 | 8014 | 1282 | 83 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5926 | 89.2857 | 96.1538 | 93.2468 | 25 | 3 | 25 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | hetalt | 92.5926 | 87.7193 | 98.0392 | 75.4808 | 50 | 7 | 50 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | * | 92.5926 | 94.5946 | 90.6736 | 97.1634 | 175 | 10 | 175 | 18 | 1 | 5.5556 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5926 | 100.0000 | 86.2069 | 89.1386 | 25 | 0 | 25 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.5926 | 92.5926 | 92.5926 | 96.3215 | 25 | 2 | 25 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.5926 | 94.7867 | 90.4977 | 51.4286 | 200 | 11 | 200 | 21 | 19 | 90.4762 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 92.5926 | 86.2069 | 100.0000 | 90.7063 | 25 | 4 | 25 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5922 | 88.6792 | 96.8663 | 47.5010 | 2444 | 312 | 2442 | 79 | 77 | 97.4684 | |
| mlin-fermikit | SNP | * | HG002compoundhet | het | 92.5921 | 86.9234 | 99.0518 | 44.4618 | 12324 | 1854 | 12327 | 118 | 22 | 18.6441 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 92.5894 | 98.5149 | 87.3362 | 94.7966 | 199 | 3 | 200 | 29 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 92.5888 | 88.8889 | 96.6102 | 92.8571 | 40 | 5 | 57 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.5887 | 97.7444 | 87.9496 | 86.9299 | 650 | 15 | 489 | 67 | 56 | 83.5821 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.5881 | 92.5170 | 92.6593 | 58.2176 | 680 | 55 | 669 | 53 | 51 | 96.2264 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.5879 | 91.9586 | 93.2258 | 73.3046 | 1155 | 101 | 1156 | 84 | 55 | 65.4762 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | het | 92.5867 | 97.1154 | 88.4615 | 85.5556 | 202 | 6 | 161 | 21 | 20 | 95.2381 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | homalt | 92.5848 | 86.1934 | 100.0000 | 67.9954 | 3315 | 531 | 3316 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 92.5840 | 86.9698 | 98.9730 | 26.4574 | 9658 | 1447 | 9926 | 103 | 93 | 90.2913 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5832 | 87.5139 | 98.2759 | 42.2886 | 785 | 112 | 798 | 14 | 12 | 85.7143 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5831 | 88.2783 | 97.3293 | 62.2126 | 2779 | 369 | 2879 | 79 | 3 | 3.7975 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | * | 92.5829 | 87.0042 | 98.9261 | 90.0355 | 2303 | 344 | 2303 | 25 | 7 | 28.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | het | 92.5822 | 87.8732 | 97.8244 | 80.8303 | 26311 | 3631 | 26304 | 585 | 55 | 9.4017 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 73.8056 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 68.5149 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5795 | 92.5795 | 92.5795 | 69.2391 | 262 | 21 | 262 | 21 | 19 | 90.4762 | |
| ckim-vqsr | INDEL | D1_5 | HG002complexvar | hetalt | 92.5788 | 88.8314 | 96.6563 | 72.4212 | 1201 | 151 | 1243 | 43 | 43 | 100.0000 | |