PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31201-31250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.6625 | 90.2806 | 95.1736 | 68.0131 | 2220 | 239 | 2879 | 146 | 107 | 73.2877 | |
| gduggal-bwaplat | INDEL | * | * | * | 92.6621 | 87.0843 | 99.0034 | 65.2816 | 300042 | 44500 | 299917 | 3019 | 1851 | 61.3117 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6613 | 88.2236 | 97.5691 | 65.2191 | 884 | 118 | 883 | 22 | 22 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.6612 | 92.6531 | 92.6694 | 58.4244 | 681 | 54 | 670 | 53 | 51 | 96.2264 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | het | 92.6606 | 90.9910 | 94.3925 | 96.3680 | 101 | 10 | 101 | 6 | 3 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.6606 | 100.0000 | 86.3248 | 96.3551 | 1 | 0 | 101 | 16 | 8 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.6603 | 88.6076 | 97.1014 | 74.9319 | 280 | 36 | 268 | 8 | 7 | 87.5000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.6592 | 93.9050 | 91.4460 | 61.1858 | 909 | 59 | 898 | 84 | 35 | 41.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6585 | 93.5681 | 91.7665 | 71.7189 | 611 | 42 | 613 | 55 | 44 | 80.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6583 | 87.5470 | 98.4034 | 64.1001 | 1863 | 265 | 1849 | 30 | 27 | 90.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.6554 | 86.3158 | 100.0000 | 88.5321 | 82 | 13 | 75 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.6528 | 90.4762 | 94.9367 | 73.7977 | 152 | 16 | 150 | 8 | 7 | 87.5000 | |
| mlin-fermikit | SNP | * | HG002compoundhet | homalt | 92.6523 | 98.4233 | 87.5206 | 41.6338 | 10612 | 170 | 10618 | 1514 | 1310 | 86.5258 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.6522 | 92.5170 | 92.7878 | 58.2513 | 680 | 55 | 669 | 52 | 50 | 96.1538 | |
| astatham-gatk | SNP | * | map_l250_m2_e0 | * | 92.6519 | 86.9119 | 99.2038 | 90.7351 | 6853 | 1032 | 6853 | 55 | 19 | 34.5455 | |
| jlack-gatk | INDEL | * | map_l125_m0_e0 | * | 92.6519 | 97.7324 | 88.0734 | 92.1312 | 862 | 20 | 864 | 117 | 6 | 5.1282 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6496 | 93.4426 | 91.8699 | 73.4341 | 114 | 8 | 113 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | homalt | 92.6495 | 86.3745 | 99.9076 | 72.5432 | 9737 | 1536 | 9728 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | homalt | 92.6495 | 88.0734 | 97.7273 | 92.8026 | 96 | 13 | 129 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | * | 92.6484 | 96.6754 | 88.9435 | 89.1467 | 1105 | 38 | 1086 | 135 | 19 | 14.0741 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | * | 92.6480 | 96.1047 | 89.4313 | 82.4164 | 19713 | 799 | 19530 | 2308 | 189 | 8.1889 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6472 | 93.4150 | 91.8919 | 71.8393 | 610 | 43 | 612 | 54 | 41 | 75.9259 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6471 | 91.3043 | 94.0299 | 88.5470 | 63 | 6 | 63 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 92.6471 | 86.3014 | 100.0000 | 73.5294 | 63 | 10 | 63 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6471 | 92.6471 | 92.6471 | 97.3344 | 63 | 5 | 63 | 5 | 3 | 60.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.6470 | 89.9396 | 95.5224 | 75.4579 | 447 | 50 | 448 | 21 | 12 | 57.1429 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | het | 92.6451 | 97.4464 | 88.2947 | 79.7695 | 15531 | 407 | 15471 | 2051 | 143 | 6.9722 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6448 | 88.6228 | 97.0492 | 64.9425 | 888 | 114 | 888 | 27 | 24 | 88.8889 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | het | 92.6447 | 98.1534 | 87.7215 | 91.9821 | 1382 | 26 | 1386 | 194 | 9 | 4.6392 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 92.6432 | 90.5983 | 94.7826 | 88.7586 | 106 | 11 | 109 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6411 | 87.7193 | 98.1481 | 99.2565 | 50 | 7 | 53 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 92.6407 | 93.8596 | 91.4530 | 88.9934 | 107 | 7 | 107 | 10 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.6375 | 87.4780 | 98.4438 | 32.3935 | 5959 | 853 | 6326 | 100 | 89 | 89.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6361 | 99.3135 | 86.8000 | 48.5597 | 434 | 3 | 434 | 66 | 66 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.6354 | 91.1441 | 94.1762 | 35.9848 | 16642 | 1617 | 17303 | 1070 | 870 | 81.3084 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.6329 | 89.7120 | 95.7505 | 61.0009 | 14423 | 1654 | 21721 | 964 | 836 | 86.7220 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.6329 | 89.7120 | 95.7505 | 61.0009 | 14423 | 1654 | 21721 | 964 | 836 | 86.7220 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | het | 92.6316 | 89.7959 | 95.6522 | 77.1144 | 44 | 5 | 44 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | het | 92.6316 | 100.0000 | 86.2745 | 57.1429 | 44 | 0 | 44 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 92.6316 | 86.2745 | 100.0000 | 91.1290 | 44 | 7 | 44 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l125_m1_e0 | het | 92.6306 | 98.1273 | 87.7170 | 91.3380 | 1310 | 25 | 1314 | 184 | 8 | 4.3478 | |
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | * | 92.6283 | 96.0476 | 89.4441 | 77.2407 | 31543 | 1298 | 31148 | 3676 | 276 | 7.5082 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.6261 | 95.2133 | 90.1758 | 75.1797 | 915 | 46 | 872 | 95 | 85 | 89.4737 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.6249 | 86.3494 | 99.8841 | 40.2114 | 3302 | 522 | 3447 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.6230 | 99.7947 | 86.4130 | 66.7870 | 486 | 1 | 477 | 75 | 70 | 93.3333 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | het | 92.6228 | 98.1308 | 87.7002 | 91.9195 | 1365 | 26 | 1369 | 192 | 9 | 4.6875 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.6223 | 86.4151 | 99.7904 | 48.0392 | 458 | 72 | 476 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.6206 | 97.5940 | 88.1295 | 86.9820 | 649 | 16 | 490 | 66 | 61 | 92.4242 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 92.6206 | 91.0853 | 94.2085 | 83.6799 | 235 | 23 | 244 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | het | 92.6198 | 92.8205 | 92.4200 | 56.3998 | 2896 | 224 | 2975 | 244 | 197 | 80.7377 | |