PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30901-30950 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.8911 | 87.3497 | 99.1833 | 60.3693 | 22151 | 3208 | 22225 | 183 | 36 | 19.6721 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.8902 | 95.7121 | 90.2299 | 74.0007 | 625 | 28 | 628 | 68 | 67 | 98.5294 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | hetalt | 92.8870 | 88.8000 | 97.3684 | 89.1841 | 111 | 14 | 111 | 3 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8865 | 96.0317 | 89.9408 | 90.7338 | 1694 | 70 | 1824 | 204 | 45 | 22.0588 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.8856 | 96.9499 | 89.1483 | 74.7503 | 4164 | 131 | 4124 | 502 | 11 | 2.1912 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | * | 92.8814 | 87.2611 | 99.2754 | 66.7470 | 137 | 20 | 137 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.8801 | 90.1364 | 95.7959 | 52.1555 | 5483 | 600 | 7793 | 342 | 302 | 88.3041 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.8800 | 87.8788 | 98.4848 | 94.0000 | 58 | 8 | 65 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8797 | 87.6923 | 98.7194 | 39.9301 | 855 | 120 | 848 | 11 | 11 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.8775 | 93.1174 | 92.6389 | 73.8277 | 690 | 51 | 667 | 53 | 47 | 88.6792 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | homalt | 92.8770 | 86.7681 | 99.9113 | 74.6788 | 10151 | 1548 | 10142 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_siren | * | 92.8750 | 88.1232 | 98.1685 | 71.3358 | 40475 | 5455 | 40467 | 755 | 31 | 4.1060 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | het | 92.8712 | 92.3848 | 93.3627 | 86.3201 | 11428 | 942 | 11450 | 814 | 456 | 56.0197 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.8663 | 91.3194 | 94.4664 | 79.0041 | 263 | 25 | 239 | 14 | 8 | 57.1429 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8661 | 87.0293 | 99.5422 | 40.0515 | 3328 | 496 | 3479 | 16 | 16 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.8637 | 87.9925 | 98.3058 | 30.4621 | 4199 | 573 | 4468 | 77 | 70 | 90.9091 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.8623 | 89.4444 | 96.5517 | 85.0649 | 644 | 76 | 644 | 23 | 10 | 43.4783 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8613 | 87.6232 | 98.7654 | 88.2880 | 800 | 113 | 800 | 10 | 3 | 30.0000 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | het | 92.8605 | 99.0519 | 87.3976 | 83.4310 | 10030 | 96 | 10028 | 1446 | 80 | 5.5325 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.8582 | 89.4839 | 96.4970 | 68.0383 | 3242 | 381 | 3223 | 117 | 42 | 35.8974 | |
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.8573 | 92.4054 | 93.3136 | 74.7428 | 9308 | 765 | 9462 | 678 | 457 | 67.4041 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.8572 | 96.8783 | 89.1566 | 74.3497 | 931 | 30 | 888 | 108 | 98 | 90.7407 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.8571 | 100.0000 | 86.6667 | 86.6071 | 13 | 0 | 13 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 58.3333 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 89.3443 | 13 | 2 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5507 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.2527 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 86.2338 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 92.8571 | 86.6667 | 100.0000 | 96.2428 | 13 | 2 | 13 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 55.8824 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 84.7059 | 13 | 2 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.0994 | 13 | 2 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 84.9432 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 53.1250 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.6229 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.7377 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.0606 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.1194 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | segdup | * | 92.8571 | 95.2880 | 90.5473 | 94.7561 | 182 | 9 | 182 | 19 | 5 | 26.3158 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 92.8571 | 86.6667 | 100.0000 | 96.7005 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | het | 92.8571 | 98.1132 | 88.1356 | 97.2861 | 52 | 1 | 52 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.1667 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.8273 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 55.8824 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5426 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 53.1250 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | hetalt | 92.8571 | 92.8571 | 92.8571 | 89.3130 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m2_e0 | het | 92.8571 | 92.8571 | 92.8571 | 96.9697 | 13 | 1 | 13 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m2_e1 | het | 92.8571 | 92.8571 | 92.8571 | 97.0276 | 13 | 1 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.8571 | 86.6667 | 100.0000 | 95.4225 | 13 | 2 | 13 | 0 | 0 | ||