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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
30801-30850 / 86044 show all
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
92.9649
87.8049
98.7692
75.2098
3244532140
0.0000
jmaeng-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9648
89.8058
96.3542
88.3918
1852118573
42.8571
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.9624
97.8970
88.5014
84.9075
931209391221
0.8197
qzeng-customINDELD1_5map_sirenhet
92.9621
88.8889
97.4265
85.9785
202425321205632
57.1429
anovak-vgINDELD1_5HG002complexvarhomalt
92.9611
95.2727
90.7590
57.9711
10097501102241041840
80.6916
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
92.9602
93.1759
92.7455
64.5850
710528316547
72.3077
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
ckim-gatkSNPtvmap_siren*
92.9580
88.1058
98.3758
71.0821
4046754634045966831
4.6407
ckim-isaacINDEL*tech_badpromoters*
92.9577
86.8421
100.0000
48.4127
66106500
ckim-dragenINDELD1_5map_l250_m0_e0het
92.9577
100.0000
86.8421
97.4132
3303350
0.0000
egarrison-hhgaINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
92.9577
89.1892
97.0588
75.8865
3343311
100.0000
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
92.9577
91.6667
94.2857
75.0000
3333322
100.0000
ckim-vqsrINDELI1_5map_l150_m0_e0het
92.9577
93.3962
92.5234
96.0647
9979980
0.0000
dgrover-gatkINDELD1_5map_l250_m0_e0het
92.9577
100.0000
86.8421
97.5641
3303350
0.0000
jmaeng-gatkINDELD16_PLUSmap_sirenhomalt
92.9577
97.0588
89.1892
94.0419
3313340
0.0000
ltrigg-rtg2INDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
92.9577
89.1892
97.0588
68.8073
3343311
100.0000
ltrigg-rtg1SNPtvtech_badpromotershet
92.9577
100.0000
86.8421
59.1398
3303350
0.0000
ndellapenna-hhgaINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
92.9577
89.1892
97.0588
77.0270
3343311
100.0000
raldana-dualsentieonINDELI1_5map_l250_m1_e0*
92.9577
93.3962
92.5234
94.8483
9979981
12.5000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
92.9548
89.6552
96.5066
51.9916
44251442163
18.7500
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.9543
91.5421
94.4108
58.8410
587754311520682569
83.4311
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.9543
91.5421
94.4108
58.8410
587754311520682569
83.4311
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.9504
91.0204
94.9640
50.7442
669666603534
97.1429
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.9493
87.1795
99.5370
80.2016
4426543022
100.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.9487
86.8263
100.0000
68.7764
1452214800
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.9487
86.8263
100.0000
68.5775
1452214800
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.9487
86.8263
100.0000
68.9076
1452214800
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
92.9480
87.0130
99.7519
36.5354
4026040211
100.0000
jlack-gatkINDELD6_15map_l125_m1_e0*
92.9461
95.7265
90.3226
91.9897
1125112121
8.3333
ghariani-varprowlSNPtiHG002compoundhethomalt
92.9457
99.8242
86.9540
37.0935
73811373851108880
79.4224
gduggal-snapfbINDEL*map_l100_m2_e1het
92.9455
91.2079
94.7505
82.9512
2137206218412122
18.1818
astatham-gatkSNPtvmap_siren*
92.9445
86.9192
99.8674
62.0464
399226008399145321
39.6226
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
92.9441
99.3912
87.2825
81.4778
65346529578
82.1053
gduggal-bwafbINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
92.9425
91.5612
94.3662
39.3162
217206744
100.0000
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
92.9382
92.2964
93.5890
71.7186
12581051708117101
86.3248
ltrigg-rtg2INDELI1_5map_l250_m2_e0het
92.9378
89.3939
96.7742
93.0023
5976020
0.0000
ltrigg-rtg2INDELI1_5map_l250_m2_e1het
92.9378
89.3939
96.7742
93.3405
5976020
0.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.9377
87.2897
99.3671
71.9361
4676847133
100.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.9369
89.2961
96.8873
47.7240
246129524597977
97.4684
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
92.9368
98.4252
88.0282
53.4426
12521251716
94.1176
ltrigg-rtg1INDELI1_5map_l100_m1_e0hetalt
92.9362
88.6364
97.6744
92.8808
3954211
100.0000
ltrigg-rtg1INDELI1_5map_l100_m2_e0hetalt
92.9362
88.6364
97.6744
93.3846
3954211
100.0000
jlack-gatkINDELI16_PLUS*hetalt
92.9357
87.1306
99.5697
57.5280
1828270185187
87.5000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
92.9356
91.3534
94.5736
81.3987
243232441411
78.5714
hfeng-pmm3INDELD16_PLUSmap_siren*
92.9353
92.3077
93.5714
92.9895
1321113191
11.1111
cchapple-customINDELI6_15map_l100_m2_e1*
92.9336
92.2414
93.6364
88.3103
107910372
28.5714
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9325
86.8895
99.8788
38.1155
2366357247333
100.0000
hfeng-pmm2INDELD1_5map_l250_m0_e0*
92.9293
100.0000
86.7925
97.1973
4604670
0.0000
astatham-gatkINDELD1_5map_l250_m0_e0*
92.9293
100.0000
86.7925
97.3827
4604670
0.0000