PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30301-30350 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 95.5840 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.0952 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 93.7500 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.2812 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m0_e0 | * | 93.3333 | 93.3333 | 93.3333 | 94.7183 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | het | 93.3333 | 93.3333 | 93.3333 | 92.0000 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.2727 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | het | 93.3333 | 93.3333 | 93.3333 | 93.0070 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | het | 93.3333 | 93.3333 | 93.3333 | 93.1663 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.5522 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l250_m2_e0 | * | 93.3333 | 87.5000 | 100.0000 | 97.8528 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.9412 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 93.3333 | 87.5000 | 100.0000 | 99.8894 | 14 | 2 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.2049 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.3153 | 42 | 6 | 43 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
| ciseli-custom | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 41.6667 | 7 | 1 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 47.0588 | 7 | 1 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 92.5234 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.7560 | 11 | 0 | 14 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 96.8254 | 6 | 0 | 7 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 96.7290 | 14 | 2 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 98.0723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5758 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 41.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 34.3750 | 21 | 3 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.5714 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3282 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.7925 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.0625 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.3939 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1749 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m0_e0 | * | 93.3333 | 87.5000 | 100.0000 | 97.7987 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.3158 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.3333 | 90.0990 | 96.8085 | 93.6314 | 91 | 10 | 91 | 3 | 3 | 100.0000 | |