PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30151-30200 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.5522 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.1159 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.4539 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.4045 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.2868 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.5385 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1111 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 85.7143 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.3333 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.7097 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1538 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 73.0769 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 93.3333 | 100.0000 | 87.5000 | 56.9231 | 47 | 0 | 49 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 67.8832 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.5358 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 97.8261 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.1831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.2640 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 22.2222 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.0435 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.1722 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0213 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.6190 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.6710 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 97.8723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 93.4959 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6460 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3881 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | het | 93.3333 | 93.3333 | 93.3333 | 97.4315 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.2692 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.4615 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | tech_badpromoters | het | 93.3333 | 95.4545 | 91.3043 | 68.9189 | 42 | 2 | 42 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 99.3226 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 98.8981 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 94.2029 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 94.2446 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 53.3333 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.2727 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.7097 | 7 | 1 | 7 | 0 | 0 | ||