PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29951-30000 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.6318 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 29.5082 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.4760 | 95.9242 | 91.1498 | 55.7793 | 14168 | 602 | 14151 | 1374 | 617 | 44.9054 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | * | 93.4753 | 91.3274 | 95.7267 | 83.9230 | 3275 | 311 | 3293 | 147 | 38 | 25.8503 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4735 | 88.5110 | 99.0255 | 55.9755 | 2134 | 277 | 2134 | 21 | 19 | 90.4762 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.4727 | 88.3644 | 99.2078 | 40.1968 | 1610 | 212 | 1628 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 93.4726 | 97.2826 | 89.9497 | 97.0218 | 179 | 5 | 179 | 20 | 1 | 5.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4715 | 90.0200 | 97.1983 | 64.9943 | 902 | 100 | 902 | 26 | 23 | 88.4615 | |
| ghariani-varprowl | INDEL | D1_5 | * | homalt | 93.4710 | 89.4248 | 97.9006 | 50.1151 | 43752 | 5174 | 43695 | 937 | 631 | 67.3426 | |
| ciseli-custom | SNP | tv | segdup | het | 93.4710 | 97.3331 | 89.9038 | 92.8401 | 5146 | 141 | 5138 | 577 | 16 | 2.7730 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | het | 93.4708 | 92.8977 | 94.0510 | 85.3951 | 1308 | 100 | 1328 | 84 | 14 | 16.6667 | |
| ckim-isaac | SNP | * | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| ckim-isaac | SNP | tv | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | het | 93.4675 | 98.3819 | 89.0208 | 93.4867 | 304 | 5 | 300 | 37 | 13 | 35.1351 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4673 | 92.0792 | 94.8980 | 93.3106 | 93 | 8 | 93 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4673 | 87.7358 | 100.0000 | 72.8814 | 93 | 13 | 96 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.4668 | 92.7820 | 94.1618 | 66.2439 | 617 | 48 | 1629 | 101 | 95 | 94.0594 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.4664 | 90.7546 | 96.3452 | 62.2067 | 2189 | 223 | 2188 | 83 | 56 | 67.4699 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4659 | 95.5595 | 91.4621 | 42.7719 | 11965 | 556 | 34730 | 3242 | 2192 | 67.6126 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.4653 | 94.4068 | 92.5425 | 38.8281 | 6971 | 413 | 14221 | 1146 | 906 | 79.0576 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.4647 | 97.8852 | 89.4261 | 56.5157 | 1620 | 35 | 1683 | 199 | 186 | 93.4673 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.4645 | 92.7140 | 94.2272 | 74.8006 | 509 | 40 | 506 | 31 | 19 | 61.2903 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4634 | 89.3657 | 97.9550 | 62.9826 | 479 | 57 | 479 | 10 | 9 | 90.0000 | |
| ckim-gatk | INDEL | * | HG002compoundhet | het | 93.4586 | 98.5589 | 88.8602 | 79.6039 | 4035 | 59 | 3789 | 475 | 465 | 97.8947 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.4581 | 91.0630 | 95.9827 | 61.5473 | 5757 | 565 | 5758 | 241 | 180 | 74.6888 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.4581 | 91.0630 | 95.9827 | 61.5473 | 5757 | 565 | 5758 | 241 | 180 | 74.6888 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 93.4579 | 94.3396 | 92.5926 | 97.3607 | 100 | 6 | 100 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.4579 | 88.5135 | 98.9873 | 78.5209 | 393 | 51 | 391 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.4570 | 88.8571 | 98.5591 | 32.4903 | 311 | 39 | 342 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | homalt | 93.4557 | 87.7304 | 99.9806 | 69.1888 | 5141 | 719 | 5142 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.4546 | 88.0282 | 99.5940 | 77.7945 | 750 | 102 | 736 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.4540 | 98.6270 | 88.7967 | 40.4203 | 431 | 6 | 428 | 54 | 54 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4534 | 92.3513 | 94.5822 | 43.0987 | 9611 | 796 | 14228 | 815 | 315 | 38.6503 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | het | 93.4529 | 97.7284 | 89.5358 | 84.8427 | 12089 | 281 | 11996 | 1402 | 82 | 5.8488 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 93.4527 | 97.3244 | 89.8773 | 93.2797 | 291 | 8 | 293 | 33 | 2 | 6.0606 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | * | 93.4524 | 94.8640 | 92.0821 | 97.4260 | 314 | 17 | 314 | 27 | 2 | 7.4074 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 93.4498 | 98.2619 | 89.0871 | 88.3254 | 848 | 15 | 849 | 104 | 6 | 5.7692 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 93.4498 | 93.8596 | 93.0435 | 95.5461 | 107 | 7 | 107 | 8 | 1 | 12.5000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | het | 93.4498 | 96.3964 | 90.6780 | 93.2610 | 107 | 4 | 107 | 11 | 1 | 9.0909 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | het | 93.4498 | 87.7049 | 100.0000 | 89.6190 | 107 | 15 | 109 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4478 | 94.6950 | 92.2330 | 77.5820 | 2981 | 167 | 2945 | 248 | 101 | 40.7258 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.4462 | 95.8525 | 91.1578 | 42.6611 | 1872 | 81 | 1866 | 181 | 162 | 89.5028 | |
| gduggal-bwavard | INDEL | I1_5 | map_siren | * | 93.4444 | 92.8453 | 94.0513 | 82.2555 | 2790 | 215 | 2751 | 174 | 115 | 66.0920 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 93.4443 | 94.0741 | 92.8230 | 84.6999 | 127 | 8 | 194 | 15 | 8 | 53.3333 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.4426 | 96.6102 | 90.4762 | 76.4045 | 57 | 2 | 57 | 6 | 6 | 100.0000 | |