PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29551-29600 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.7638 | 98.6660 | 89.3256 | 80.9138 | 1997 | 27 | 2000 | 239 | 13 | 5.4393 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.7601 | 98.6107 | 89.3644 | 68.0129 | 17603 | 248 | 17687 | 2105 | 19 | 0.9026 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.7592 | 93.1507 | 94.3756 | 73.2357 | 1836 | 135 | 1829 | 109 | 67 | 61.4679 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.7592 | 93.1507 | 94.3756 | 73.2357 | 1836 | 135 | 1829 | 109 | 67 | 61.4679 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.7587 | 96.7213 | 90.9722 | 86.3636 | 118 | 4 | 131 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | het | 93.7564 | 95.0207 | 92.5253 | 90.0901 | 458 | 24 | 458 | 37 | 19 | 51.3514 | |
| gduggal-snapvard | SNP | ti | map_l125_m1_e0 | * | 93.7547 | 96.2264 | 91.4068 | 77.7724 | 28228 | 1107 | 27965 | 2629 | 225 | 8.5584 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | het | 93.7547 | 94.5804 | 92.9432 | 94.2561 | 541 | 31 | 540 | 41 | 8 | 19.5122 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | homalt | 93.7520 | 98.5997 | 89.3586 | 51.1570 | 1197 | 17 | 1226 | 146 | 83 | 56.8493 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | * | 93.7516 | 95.1544 | 92.3895 | 83.9860 | 3358 | 171 | 3302 | 272 | 95 | 34.9265 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | hetalt | 93.7506 | 91.2142 | 96.4321 | 47.8822 | 924 | 89 | 973 | 36 | 36 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 93.7500 | 88.2353 | 100.0000 | 89.8901 | 45 | 6 | 46 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 81.7647 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 83.7696 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.1026 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 92.3967 | 45 | 5 | 45 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 52.9412 | 15 | 2 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.7212 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 86.1862 | 45 | 5 | 45 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.7500 | 93.7500 | 93.7500 | 78.9474 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.7291 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.4035 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.6379 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7500 | 92.5926 | 94.9367 | 79.3194 | 75 | 6 | 75 | 4 | 4 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 91.1458 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.2374 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.4444 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 93.7500 | 96.7742 | 90.9091 | 83.1633 | 30 | 1 | 30 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 73.9130 | 60 | 8 | 60 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 75.5102 | 60 | 8 | 60 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 50.0000 | 15 | 2 | 15 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.7500 | 98.3607 | 89.5522 | 91.1842 | 60 | 1 | 60 | 7 | 5 | 71.4286 | |
| hfeng-pmm3 | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 54.5455 | 15 | 2 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 93.7500 | 92.5926 | 94.9367 | 88.7357 | 450 | 36 | 450 | 24 | 17 | 70.8333 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 93.7500 | 93.7500 | 93.7500 | 87.8788 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 93.7500 | 93.7500 | 93.7500 | 88.1481 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 77.5194 | 60 | 8 | 58 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 78.0303 | 60 | 8 | 58 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 93.7500 | 90.9091 | 96.7742 | 90.4321 | 30 | 3 | 30 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 85.0877 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.3134 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.5912 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.7500 | 98.9446 | 89.0736 | 60.1703 | 375 | 4 | 375 | 46 | 46 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 57.1429 | 15 | 2 | 15 | 0 | 0 | ||