PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28801-28850 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 75.0000 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.2250 | 97.0760 | 91.5367 | 74.6113 | 830 | 25 | 822 | 76 | 8 | 10.5263 | |
| mlin-fermikit | INDEL | I6_15 | * | homalt | 94.2236 | 95.9609 | 92.5481 | 47.3706 | 5987 | 252 | 6011 | 484 | 481 | 99.3802 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 94.2222 | 91.3793 | 97.2477 | 84.0176 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | * | 94.2222 | 91.3793 | 97.2477 | 84.4063 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 94.2222 | 92.1739 | 96.3636 | 94.4276 | 106 | 9 | 106 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | het | 94.2221 | 95.7257 | 92.7651 | 87.6052 | 5039 | 225 | 5039 | 393 | 175 | 44.5293 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.2215 | 99.4737 | 89.4961 | 39.1577 | 1323 | 7 | 1474 | 173 | 173 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2210 | 89.9329 | 98.9384 | 59.8807 | 134 | 15 | 466 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2208 | 91.8058 | 96.7664 | 60.5925 | 1210 | 108 | 1197 | 40 | 39 | 97.5000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.2194 | 94.2529 | 94.1860 | 99.8927 | 82 | 5 | 81 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2193 | 94.2819 | 94.1567 | 58.3748 | 709 | 43 | 709 | 44 | 28 | 63.6364 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.2189 | 98.4978 | 90.2963 | 84.2175 | 6557 | 100 | 6216 | 668 | 71 | 10.6287 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.2166 | 90.2898 | 98.5006 | 65.6575 | 25924 | 2788 | 26146 | 398 | 31 | 7.7889 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.2166 | 90.2898 | 98.5006 | 65.6575 | 25924 | 2788 | 26146 | 398 | 31 | 7.7889 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.1461 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.3041 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 94.2149 | 89.0625 | 100.0000 | 87.5546 | 57 | 7 | 57 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | HG002compoundhet | het | 94.2146 | 89.2146 | 99.8084 | 51.8565 | 4169 | 504 | 4167 | 8 | 2 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2145 | 93.1450 | 95.3088 | 77.7623 | 2473 | 182 | 2438 | 120 | 91 | 75.8333 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.2123 | 89.8860 | 98.9760 | 27.5881 | 4888 | 550 | 5123 | 53 | 48 | 90.5660 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2099 | 94.9264 | 93.5043 | 70.1531 | 580 | 31 | 547 | 38 | 36 | 94.7368 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 94.2098 | 98.7752 | 90.0478 | 89.8856 | 1129 | 14 | 1131 | 125 | 6 | 4.8000 | |
| ghariani-varprowl | INDEL | * | map_siren | homalt | 94.2088 | 91.6008 | 96.9697 | 74.6820 | 2432 | 223 | 2432 | 76 | 25 | 32.8947 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2085 | 91.0448 | 97.6000 | 62.4906 | 488 | 48 | 488 | 12 | 10 | 83.3333 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2085 | 91.0448 | 97.6000 | 62.4906 | 488 | 48 | 488 | 12 | 10 | 83.3333 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | * | 94.2072 | 94.5177 | 93.8987 | 91.9751 | 2724 | 158 | 2724 | 177 | 36 | 20.3390 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2071 | 90.0993 | 98.7075 | 49.5392 | 3540 | 389 | 3513 | 46 | 33 | 71.7391 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | het | 94.2063 | 98.4127 | 90.3448 | 86.6236 | 124 | 2 | 131 | 14 | 9 | 64.2857 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e1 | het | 94.2043 | 97.9082 | 90.7704 | 83.1773 | 29020 | 620 | 28678 | 2916 | 165 | 5.6584 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.2029 | 89.0411 | 100.0000 | 68.7500 | 65 | 8 | 65 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2029 | 90.9091 | 97.7444 | 92.5113 | 130 | 13 | 130 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.2017 | 97.6736 | 90.9681 | 70.0370 | 47148 | 1123 | 48456 | 4811 | 4484 | 93.2031 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | * | 94.1997 | 95.5253 | 92.9104 | 91.8068 | 491 | 23 | 498 | 38 | 8 | 21.0526 | |
| gduggal-bwaplat | INDEL | D1_5 | * | het | 94.1987 | 89.7070 | 99.1640 | 66.4739 | 78560 | 9014 | 78527 | 662 | 219 | 33.0816 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | * | 94.1980 | 91.4993 | 97.0606 | 47.3235 | 29934 | 2781 | 29752 | 901 | 456 | 50.6104 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 94.1968 | 98.3607 | 90.3712 | 90.4265 | 780 | 13 | 779 | 83 | 29 | 34.9398 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.1964 | 100.0000 | 89.0295 | 69.3402 | 211 | 0 | 211 | 26 | 25 | 96.1538 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.1964 | 100.0000 | 89.0295 | 69.3402 | 211 | 0 | 211 | 26 | 25 | 96.1538 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.1959 | 89.4737 | 99.4444 | 63.3401 | 340 | 40 | 358 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1956 | 90.5120 | 98.1916 | 59.9330 | 3606 | 378 | 3638 | 67 | 32 | 47.7612 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | * | 94.1935 | 93.5897 | 94.8052 | 97.6388 | 73 | 5 | 73 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1925 | 89.2396 | 99.7275 | 37.7439 | 622 | 75 | 732 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1917 | 89.2562 | 99.7050 | 47.1139 | 324 | 39 | 338 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.1916 | 95.2534 | 93.1533 | 76.2686 | 5940 | 296 | 5864 | 431 | 178 | 41.2993 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1912 | 90.6623 | 98.0059 | 66.8030 | 1670 | 172 | 1671 | 34 | 28 | 82.3529 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1894 | 95.7643 | 92.6655 | 86.2889 | 520 | 23 | 518 | 41 | 8 | 19.5122 | |