PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28551-28600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | segdup | * | 94.3926 | 90.8571 | 98.2143 | 89.2994 | 159 | 16 | 165 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.3918 | 92.3695 | 96.5046 | 61.7780 | 3680 | 304 | 3672 | 133 | 128 | 96.2406 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | hetalt | 94.3915 | 91.0246 | 98.0170 | 68.2440 | 3367 | 332 | 3460 | 70 | 68 | 97.1429 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.3901 | 92.1195 | 96.7756 | 58.9739 | 2221 | 190 | 2221 | 74 | 70 | 94.5946 | |
| jlack-gatk | SNP | tv | map_l150_m1_e0 | * | 94.3885 | 98.6712 | 90.4622 | 83.2378 | 10767 | 145 | 10765 | 1135 | 67 | 5.9031 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | het | 94.3869 | 99.0455 | 90.1469 | 82.7150 | 28121 | 271 | 28115 | 3073 | 220 | 7.1591 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.3862 | 92.1687 | 96.7130 | 85.8775 | 765 | 65 | 765 | 26 | 19 | 73.0769 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | het | 94.3861 | 89.4072 | 99.9521 | 52.4903 | 4178 | 495 | 4176 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.3859 | 89.8140 | 99.4483 | 30.8646 | 2125 | 241 | 2163 | 12 | 11 | 91.6667 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.3857 | 90.2532 | 98.9147 | 46.6501 | 1889 | 204 | 1914 | 21 | 21 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | het | 94.3848 | 96.2341 | 92.6053 | 87.5145 | 1891 | 74 | 1891 | 151 | 50 | 33.1126 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.3828 | 89.4773 | 99.8574 | 56.4904 | 9107 | 1071 | 9104 | 13 | 13 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.3820 | 89.3617 | 100.0000 | 56.7010 | 42 | 5 | 42 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.3820 | 93.3333 | 95.4545 | 92.6789 | 42 | 3 | 42 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 89.9761 | 42 | 5 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.3820 | 95.4545 | 93.3333 | 96.9512 | 42 | 2 | 42 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 88.8298 | 42 | 5 | 42 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.9266 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | het | 94.3820 | 95.4545 | 93.3333 | 56.7308 | 42 | 2 | 42 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | * | 94.3820 | 89.3617 | 100.0000 | 89.7311 | 42 | 5 | 42 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.3820 | 99.2126 | 90.0000 | 53.0201 | 126 | 1 | 126 | 14 | 13 | 92.8571 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 94.3820 | 89.3617 | 100.0000 | 94.9766 | 42 | 5 | 43 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.3814 | 92.1127 | 96.7647 | 63.8170 | 981 | 84 | 987 | 33 | 27 | 81.8182 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | het | 94.3799 | 96.1802 | 92.6457 | 86.7828 | 982 | 39 | 1033 | 82 | 17 | 20.7317 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3796 | 89.9642 | 99.2509 | 66.4573 | 251 | 28 | 265 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | het | 94.3784 | 89.7744 | 99.4801 | 60.9343 | 597 | 68 | 574 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3772 | 92.4257 | 96.4128 | 70.4962 | 3734 | 306 | 3709 | 138 | 44 | 31.8841 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | het | 94.3765 | 95.7816 | 93.0120 | 85.5736 | 1158 | 51 | 1158 | 87 | 61 | 70.1149 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.3762 | 93.4319 | 95.3398 | 81.6399 | 569 | 40 | 491 | 24 | 16 | 66.6667 | |
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | * | 94.3742 | 97.2799 | 91.6370 | 91.1799 | 2575 | 72 | 2575 | 235 | 32 | 13.6170 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 94.3723 | 98.1982 | 90.8333 | 95.7865 | 109 | 2 | 109 | 11 | 1 | 9.0909 | |
| hfeng-pmm3 | SNP | tv | HG002compoundhet | het | 94.3711 | 89.5142 | 99.7852 | 53.0848 | 4183 | 490 | 4181 | 9 | 2 | 22.2222 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 94.3709 | 91.9355 | 96.9388 | 89.0052 | 285 | 25 | 285 | 9 | 6 | 66.6667 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.3685 | 96.3964 | 92.4242 | 70.2894 | 428 | 16 | 427 | 35 | 32 | 91.4286 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.3680 | 92.4804 | 96.3342 | 31.9134 | 16886 | 1373 | 16845 | 641 | 574 | 89.5476 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | het | 94.3674 | 95.8506 | 92.9293 | 85.6812 | 462 | 20 | 460 | 35 | 5 | 14.2857 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | * | 94.3667 | 92.4859 | 96.3257 | 81.1411 | 28272 | 2297 | 28287 | 1079 | 590 | 54.6803 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | het | 94.3662 | 94.3662 | 94.3662 | 94.5636 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | het | 94.3662 | 94.3662 | 94.3662 | 94.6896 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3662 | 90.5405 | 98.5294 | 79.5181 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | homalt | 94.3662 | 90.5405 | 98.5294 | 29.8969 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | het | 94.3638 | 98.2283 | 90.7919 | 91.5103 | 499 | 9 | 493 | 50 | 22 | 44.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | * | 94.3636 | 90.4918 | 98.5816 | 93.0781 | 276 | 29 | 278 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | het | 94.3634 | 98.1060 | 90.8959 | 79.1108 | 15125 | 292 | 15076 | 1510 | 87 | 5.7616 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 94.3627 | 91.6667 | 97.2222 | 98.4307 | 11 | 1 | 35 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3619 | 97.5940 | 91.3371 | 87.9208 | 649 | 16 | 485 | 46 | 31 | 67.3913 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.3610 | 99.7108 | 89.5561 | 64.7005 | 1379 | 4 | 1372 | 160 | 26 | 16.2500 | |