PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28501-28550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.4317 | 89.6700 | 99.7275 | 38.3193 | 625 | 72 | 732 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | * | homalt | 94.4302 | 91.5834 | 97.4597 | 39.6857 | 55342 | 5086 | 55284 | 1441 | 928 | 64.3997 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 94.4299 | 96.8750 | 92.1053 | 92.2607 | 31 | 1 | 35 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.4269 | 92.1672 | 96.8002 | 61.2699 | 87051 | 7398 | 86368 | 2855 | 2059 | 72.1191 | |
| jlack-gatk | INDEL | I6_15 | map_siren | * | 94.4262 | 94.4262 | 94.4262 | 85.4137 | 288 | 17 | 288 | 17 | 4 | 23.5294 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | * | 94.4260 | 94.9425 | 93.9150 | 88.9970 | 826 | 44 | 818 | 53 | 23 | 43.3962 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.4254 | 93.6982 | 95.1641 | 69.9844 | 565 | 38 | 551 | 28 | 12 | 42.8571 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | * | 94.4251 | 89.6732 | 99.7089 | 83.7895 | 686 | 79 | 685 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.4249 | 99.7395 | 89.6480 | 70.2838 | 3446 | 9 | 3464 | 400 | 231 | 57.7500 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4243 | 97.9408 | 91.1515 | 88.7786 | 761 | 16 | 752 | 73 | 34 | 46.5753 | |
| jlack-gatk | INDEL | D6_15 | map_siren | * | 94.4231 | 96.4637 | 92.4670 | 85.5628 | 491 | 18 | 491 | 40 | 5 | 12.5000 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | het | 94.4229 | 98.7586 | 90.4519 | 56.9085 | 14002 | 176 | 5845 | 617 | 93 | 15.0729 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 96.1457 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 90.6598 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4227 | 98.4802 | 90.6863 | 72.2353 | 17301 | 267 | 17390 | 1786 | 11 | 0.6159 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | het | 94.4212 | 97.9207 | 91.1633 | 92.2470 | 5086 | 108 | 5086 | 493 | 83 | 16.8357 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | * | 94.4209 | 93.4882 | 95.3725 | 87.3515 | 2053 | 143 | 2061 | 100 | 24 | 24.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | het | 94.4206 | 94.1869 | 94.6554 | 70.0188 | 2560 | 158 | 2568 | 145 | 95 | 65.5172 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.4206 | 93.9769 | 94.8685 | 35.6370 | 2200 | 141 | 2200 | 119 | 109 | 91.5966 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.4196 | 95.2703 | 93.5841 | 72.6227 | 423 | 21 | 423 | 29 | 20 | 68.9655 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4189 | 94.5959 | 94.2426 | 73.7195 | 2013 | 115 | 1997 | 122 | 101 | 82.7869 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.4183 | 93.3511 | 95.5102 | 59.6597 | 702 | 50 | 702 | 33 | 22 | 66.6667 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | het | 94.4176 | 97.9823 | 91.1032 | 89.6399 | 777 | 16 | 768 | 75 | 36 | 48.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4170 | 92.5452 | 96.3660 | 61.9062 | 3687 | 297 | 3686 | 139 | 128 | 92.0863 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4140 | 91.7105 | 97.2817 | 66.6928 | 9238 | 835 | 9090 | 254 | 209 | 82.2835 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.4123 | 91.4179 | 97.6096 | 63.6495 | 490 | 46 | 490 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4108 | 90.6200 | 98.5326 | 48.7374 | 5072 | 525 | 11281 | 168 | 144 | 85.7143 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 94.4089 | 98.4733 | 90.6667 | 87.1023 | 129 | 2 | 136 | 14 | 9 | 64.2857 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.4079 | 91.7293 | 97.2477 | 87.7940 | 122 | 11 | 106 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.4079 | 91.7293 | 97.2477 | 87.7940 | 122 | 11 | 106 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.4079 | 91.7293 | 97.2477 | 87.7252 | 122 | 11 | 106 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.4079 | 91.7293 | 97.2477 | 87.7940 | 122 | 11 | 106 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.4072 | 100.0000 | 89.4068 | 69.3904 | 211 | 0 | 211 | 25 | 24 | 96.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.4072 | 100.0000 | 89.4068 | 69.4696 | 211 | 0 | 211 | 25 | 24 | 96.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4069 | 93.3537 | 95.4842 | 40.6110 | 22909 | 1631 | 24020 | 1136 | 871 | 76.6725 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | het | 94.4053 | 97.9293 | 91.1260 | 92.3124 | 5155 | 109 | 5155 | 502 | 85 | 16.9323 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4040 | 96.4646 | 92.4295 | 77.5992 | 2101 | 77 | 1868 | 153 | 139 | 90.8497 | |
| jlack-gatk | SNP | tv | map_l100_m2_e0 | het | 94.4020 | 99.3218 | 89.9466 | 81.2769 | 15670 | 107 | 15666 | 1751 | 90 | 5.1399 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4019 | 90.2778 | 98.9209 | 55.1854 | 260 | 28 | 825 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | * | 94.4016 | 91.4062 | 97.6000 | 88.7691 | 117 | 11 | 122 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4009 | 91.5493 | 97.4359 | 75.4588 | 455 | 42 | 456 | 12 | 12 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4009 | 91.5493 | 97.4359 | 75.4588 | 455 | 42 | 456 | 12 | 12 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | het | 94.4000 | 98.3333 | 90.7692 | 93.0851 | 59 | 1 | 59 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.4000 | 89.3939 | 100.0000 | 85.7855 | 59 | 7 | 57 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | hetalt | 94.4000 | 89.3939 | 100.0000 | 86.3481 | 118 | 14 | 120 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | het | 94.3995 | 98.1481 | 90.9266 | 90.6464 | 477 | 9 | 471 | 47 | 19 | 40.4255 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | het | 94.3991 | 95.4156 | 93.4040 | 78.0920 | 7576 | 364 | 7576 | 535 | 258 | 48.2243 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | hetalt | 94.3987 | 92.4975 | 96.3796 | 46.9642 | 937 | 76 | 985 | 37 | 36 | 97.2973 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.3952 | 89.8785 | 99.3897 | 87.2026 | 2442 | 275 | 2443 | 15 | 3 | 20.0000 | |