PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28451-28500 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.1683 | 17 | 2 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | * | 94.4444 | 94.4444 | 94.4444 | 96.3190 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 76.7123 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.2683 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 92.0000 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.2331 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 93.2836 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 70.4225 | 17 | 2 | 21 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 96.0177 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.1176 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 94.1558 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.2945 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.3448 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.3134 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.7282 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.6746 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 94.7059 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 72.3684 | 17 | 2 | 21 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 87.8472 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 63.9175 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 94.4444 | 94.1176 | 94.7735 | 91.6932 | 272 | 17 | 272 | 15 | 6 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.6773 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.2500 | 17 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.4701 | 17 | 2 | 17 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 86.3281 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.5335 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 96.1207 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 96.1290 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | * | 94.4444 | 89.4737 | 100.0000 | 32.0000 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | homalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 92.8571 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.4444 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 95.2880 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.8604 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| rpoplin-dv42 | INDEL | D16_PLUS | * | * | 94.4399 | 93.5879 | 95.3076 | 64.2354 | 6349 | 435 | 6337 | 312 | 290 | 92.9487 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4382 | 90.1961 | 99.0991 | 85.5280 | 46 | 5 | 110 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 94.4381 | 90.9984 | 98.1481 | 75.9754 | 556 | 55 | 689 | 13 | 12 | 92.3077 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4355 | 91.8750 | 97.1429 | 81.8436 | 441 | 39 | 442 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | * | 94.4339 | 93.4771 | 95.4104 | 92.6391 | 3511 | 245 | 5010 | 241 | 187 | 77.5934 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.4318 | 96.0944 | 92.8258 | 50.7186 | 3543 | 144 | 3597 | 278 | 63 | 22.6619 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4317 | 98.3269 | 90.8333 | 89.6462 | 764 | 13 | 763 | 77 | 26 | 33.7662 | |