PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28301-28350 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | segdup | het | 94.5277 | 98.9768 | 90.4613 | 96.5263 | 1451 | 15 | 1451 | 153 | 2 | 1.3072 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5274 | 93.1373 | 95.9596 | 92.6230 | 95 | 7 | 95 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5269 | 91.7910 | 97.4308 | 60.3759 | 492 | 44 | 493 | 13 | 11 | 84.6154 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.5246 | 91.6667 | 97.5664 | 80.0265 | 440 | 40 | 441 | 11 | 9 | 81.8182 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5236 | 90.9091 | 98.4375 | 94.3662 | 60 | 6 | 63 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.5232 | 90.1786 | 99.3077 | 80.7697 | 8383 | 913 | 3156 | 22 | 22 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.5231 | 92.2277 | 96.9357 | 58.1370 | 3726 | 314 | 10281 | 325 | 271 | 83.3846 | |
| cchapple-custom | INDEL | D6_15 | map_siren | * | 94.5230 | 93.5167 | 95.5513 | 80.9225 | 476 | 33 | 494 | 23 | 10 | 43.4783 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | het | 94.5222 | 99.0756 | 90.3690 | 83.8291 | 29366 | 274 | 29360 | 3129 | 222 | 7.0949 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.5210 | 90.5660 | 98.8372 | 86.7284 | 96 | 10 | 85 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.5208 | 90.5397 | 98.8682 | 37.7022 | 1493 | 156 | 1485 | 17 | 17 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | * | 94.5205 | 97.0079 | 92.1574 | 76.1726 | 24284 | 749 | 24195 | 2059 | 151 | 7.3337 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5197 | 89.8462 | 99.7062 | 40.7085 | 876 | 99 | 1018 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e0 | * | 94.5181 | 98.7142 | 90.6642 | 84.3431 | 11209 | 146 | 11207 | 1154 | 67 | 5.8059 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.5176 | 92.5752 | 96.5432 | 70.8171 | 1970 | 158 | 1955 | 70 | 56 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5164 | 92.1569 | 97.0000 | 93.1741 | 94 | 8 | 97 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | hetalt | 94.5148 | 89.6000 | 100.0000 | 86.6040 | 112 | 13 | 114 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.5148 | 89.6000 | 100.0000 | 27.8481 | 112 | 13 | 114 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 94.5144 | 98.0315 | 91.2409 | 91.8416 | 498 | 10 | 500 | 48 | 3 | 6.2500 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5134 | 94.8347 | 94.1942 | 82.6140 | 918 | 50 | 941 | 58 | 19 | 32.7586 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.5133 | 90.0694 | 99.4185 | 29.9723 | 4281 | 472 | 4274 | 25 | 22 | 88.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | * | 94.5123 | 95.1557 | 93.8776 | 90.9427 | 275 | 14 | 276 | 18 | 5 | 27.7778 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | * | 94.5118 | 96.7883 | 92.3398 | 94.5924 | 1326 | 44 | 1326 | 110 | 17 | 15.4545 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5116 | 95.9391 | 93.1260 | 81.3150 | 567 | 24 | 569 | 42 | 5 | 11.9048 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.5107 | 95.4217 | 93.6170 | 89.0315 | 792 | 38 | 792 | 54 | 19 | 35.1852 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.5098 | 93.8352 | 95.1942 | 74.3325 | 1446 | 95 | 1446 | 73 | 39 | 53.4247 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.5094 | 94.1647 | 94.8565 | 75.2918 | 18703 | 1159 | 18774 | 1018 | 858 | 84.2829 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.5092 | 97.3937 | 91.7906 | 91.6664 | 2840 | 76 | 2840 | 254 | 35 | 13.7795 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.5086 | 98.3261 | 90.9764 | 72.8370 | 1351 | 23 | 1351 | 134 | 68 | 50.7463 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.5069 | 96.4277 | 92.6612 | 46.2676 | 15197 | 563 | 42020 | 3328 | 2198 | 66.0457 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.5063 | 90.9091 | 98.4000 | 87.8758 | 120 | 12 | 123 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 89.3462 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | tech_badpromoters | het | 94.5055 | 97.7273 | 91.4894 | 52.0408 | 43 | 1 | 43 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5055 | 93.4783 | 95.5556 | 67.1533 | 43 | 3 | 43 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 90.5579 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | * | 94.5055 | 93.4783 | 95.5556 | 97.5179 | 43 | 3 | 43 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5055 | 93.4783 | 95.5556 | 67.1533 | 43 | 3 | 43 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 89.0000 | 43 | 5 | 44 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e0 | het | 94.5055 | 95.8599 | 93.1889 | 86.1907 | 1204 | 52 | 1204 | 88 | 61 | 69.3182 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 90.2655 | 43 | 5 | 44 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 94.5039 | 89.7494 | 99.7904 | 31.1688 | 394 | 45 | 476 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | * | 94.5007 | 93.1507 | 95.8904 | 90.7828 | 68 | 5 | 70 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | * | 94.5000 | 94.2121 | 94.7896 | 89.4714 | 6804 | 418 | 6804 | 374 | 175 | 46.7914 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4994 | 91.4980 | 97.7044 | 66.4420 | 678 | 63 | 681 | 16 | 7 | 43.7500 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4987 | 91.5493 | 97.6445 | 76.0021 | 455 | 42 | 456 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | hetalt | 94.4986 | 90.2834 | 99.1266 | 91.2895 | 223 | 24 | 227 | 2 | 2 | 100.0000 | |