PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27401-27450 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.0000 | 93.4426 | 96.6102 | 64.0244 | 114 | 8 | 114 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 95.0000 | 90.4762 | 100.0000 | 99.9564 | 19 | 2 | 19 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0000 | 90.9091 | 99.4764 | 75.1625 | 190 | 19 | 190 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 95.0000 | 98.9583 | 91.3462 | 93.7008 | 190 | 2 | 190 | 18 | 5 | 27.7778 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | het | 95.0000 | 98.7013 | 91.5663 | 57.6531 | 76 | 1 | 76 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.0000 | 90.4762 | 100.0000 | 54.7619 | 19 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.0000 | 90.4762 | 100.0000 | 99.0568 | 38 | 4 | 40 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 95.0000 | 90.4762 | 100.0000 | 99.9546 | 19 | 2 | 20 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.8401 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.9988 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9992 | 97.3939 | 92.7195 | 74.6356 | 2616 | 70 | 2598 | 204 | 19 | 9.3137 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9982 | 90.5081 | 99.9572 | 32.8251 | 2298 | 241 | 2334 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9970 | 91.8216 | 98.4000 | 75.9152 | 247 | 22 | 246 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9937 | 96.5215 | 93.5135 | 55.4063 | 3635 | 131 | 3633 | 252 | 82 | 32.5397 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9937 | 96.5215 | 93.5135 | 55.4063 | 3635 | 131 | 3633 | 252 | 82 | 32.5397 | |
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | hetalt | 94.9935 | 91.0859 | 99.2515 | 30.1736 | 7776 | 761 | 7823 | 59 | 55 | 93.2203 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9925 | 94.4604 | 95.5306 | 69.2327 | 9515 | 558 | 9362 | 438 | 390 | 89.0411 | |
| eyeh-varpipe | INDEL | I1_5 | * | * | 94.9923 | 93.5665 | 96.4622 | 53.4954 | 140971 | 9693 | 141103 | 5175 | 4944 | 95.5362 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.9922 | 92.1495 | 98.0159 | 72.8155 | 493 | 42 | 494 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.9898 | 94.4882 | 95.4967 | 65.8834 | 720 | 42 | 721 | 34 | 23 | 67.6471 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | hetalt | 94.9898 | 90.5742 | 99.8580 | 43.9696 | 7745 | 806 | 7738 | 11 | 10 | 90.9091 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9883 | 95.6391 | 94.3463 | 80.9074 | 1272 | 58 | 1068 | 64 | 58 | 90.6250 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | het | 94.9871 | 95.8312 | 94.1577 | 84.6817 | 7609 | 331 | 7607 | 472 | 119 | 25.2119 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9868 | 95.2804 | 94.6949 | 56.1929 | 10942 | 542 | 10942 | 613 | 287 | 46.8189 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.9862 | 97.5782 | 92.5283 | 63.5798 | 14263 | 354 | 14130 | 1141 | 1110 | 97.2831 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9849 | 94.4009 | 95.5762 | 69.0899 | 9509 | 564 | 9355 | 433 | 393 | 90.7621 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.9843 | 91.4144 | 98.8444 | 52.1785 | 2204 | 207 | 2224 | 26 | 17 | 65.3846 | |
| ciseli-custom | SNP | tv | HG002complexvar | * | 94.9824 | 96.7736 | 93.2564 | 24.4003 | 238213 | 7942 | 236085 | 17072 | 2875 | 16.8404 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 94.9817 | 95.7447 | 94.2308 | 91.3621 | 45 | 2 | 49 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.9807 | 96.8504 | 93.1818 | 46.5587 | 123 | 4 | 123 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.9804 | 93.5841 | 96.4190 | 67.2497 | 45174 | 3097 | 79672 | 2959 | 2749 | 92.9030 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9786 | 98.7603 | 91.4758 | 91.3901 | 717 | 9 | 719 | 67 | 4 | 5.9702 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9783 | 96.9173 | 93.1153 | 84.1668 | 1289 | 41 | 1082 | 80 | 71 | 88.7500 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | het | 94.9778 | 94.4281 | 95.5339 | 85.9705 | 4813 | 284 | 4813 | 225 | 82 | 36.4444 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.5769 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.9772 | 98.5782 | 91.6300 | 69.1156 | 208 | 3 | 208 | 19 | 18 | 94.7368 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.2941 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | het | 94.9769 | 93.5484 | 96.4497 | 90.9601 | 319 | 22 | 326 | 12 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 94.9763 | 96.8750 | 93.1507 | 89.2647 | 62 | 2 | 68 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | * | 94.9737 | 97.7584 | 92.3433 | 83.0785 | 31138 | 714 | 30742 | 2549 | 141 | 5.5316 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | homalt | 94.9724 | 91.2023 | 99.0676 | 78.9189 | 311 | 30 | 425 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9721 | 95.9293 | 94.0338 | 60.7675 | 13197 | 560 | 21640 | 1373 | 1000 | 72.8332 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.9721 | 95.9293 | 94.0338 | 60.7675 | 13197 | 560 | 21640 | 1373 | 1000 | 72.8332 | |
| gduggal-bwavard | INDEL | D1_5 | func_cds | het | 94.9721 | 100.0000 | 90.4255 | 45.3488 | 85 | 0 | 85 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9720 | 92.0000 | 98.1424 | 40.7339 | 322 | 28 | 317 | 6 | 6 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.9718 | 91.0394 | 99.2593 | 62.7586 | 254 | 25 | 268 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.9718 | 91.0394 | 99.2593 | 62.7586 | 254 | 25 | 268 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9717 | 94.1441 | 95.8140 | 64.6962 | 209 | 13 | 206 | 9 | 6 | 66.6667 | |