PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27151-27200 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | hetalt | 95.1220 | 97.5000 | 92.8571 | 93.4783 | 39 | 1 | 39 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 91.5638 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1220 | 90.6977 | 100.0000 | 77.4869 | 78 | 8 | 86 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.9908 | 39 | 4 | 39 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | tech_badpromoters | homalt | 95.1220 | 100.0000 | 90.6977 | 67.1756 | 39 | 0 | 39 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.7400 | 39 | 4 | 39 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_siren | hetalt | 95.1220 | 96.2963 | 93.9759 | 79.4045 | 78 | 3 | 78 | 5 | 4 | 80.0000 | |
| jlack-gatk | SNP | tv | map_siren | hetalt | 95.1220 | 96.2963 | 93.9759 | 79.4045 | 78 | 3 | 78 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 93.7785 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.2642 | 39 | 4 | 39 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1199 | 93.3333 | 96.9762 | 82.0124 | 448 | 32 | 449 | 14 | 10 | 71.4286 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1198 | 98.2713 | 92.1642 | 62.1469 | 739 | 13 | 741 | 63 | 62 | 98.4127 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.1193 | 92.1136 | 98.3278 | 91.8149 | 292 | 25 | 294 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002compoundhet | * | 95.1177 | 93.2080 | 97.1073 | 33.8339 | 2182 | 159 | 2182 | 65 | 63 | 96.9231 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.1176 | 93.9650 | 96.2988 | 73.4406 | 1448 | 93 | 1431 | 55 | 36 | 65.4545 | |
| raldana-dualsentieon | INDEL | * | map_siren | hetalt | 95.1168 | 90.6883 | 100.0000 | 85.1022 | 224 | 23 | 226 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.1163 | 94.9599 | 95.2731 | 65.4635 | 3674 | 195 | 3628 | 180 | 177 | 98.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1158 | 91.3043 | 99.2593 | 81.1453 | 273 | 26 | 268 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1147 | 97.5960 | 92.7564 | 74.4795 | 9459 | 233 | 9540 | 745 | 245 | 32.8859 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 95.1124 | 96.0396 | 94.2029 | 92.3248 | 194 | 8 | 195 | 12 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | hetalt | 95.1115 | 90.6787 | 100.0000 | 54.5670 | 1109 | 114 | 1149 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1114 | 91.8919 | 98.5646 | 61.0075 | 204 | 18 | 206 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1113 | 93.6897 | 96.5766 | 79.4254 | 1069 | 72 | 1072 | 38 | 21 | 55.2632 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1111 | 92.2414 | 98.1651 | 85.7516 | 107 | 9 | 107 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | het | 95.1102 | 95.7792 | 94.4504 | 92.0262 | 885 | 39 | 885 | 52 | 6 | 11.5385 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.1094 | 95.2803 | 94.9391 | 85.9113 | 3977 | 197 | 3977 | 212 | 55 | 25.9434 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | het | 95.1089 | 95.6790 | 94.5455 | 85.1619 | 465 | 21 | 468 | 27 | 3 | 11.1111 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1087 | 92.3483 | 98.0392 | 62.9283 | 350 | 29 | 350 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.1086 | 93.1759 | 97.1233 | 60.7948 | 710 | 52 | 709 | 21 | 17 | 80.9524 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.1084 | 98.7559 | 91.7206 | 61.9079 | 2699 | 34 | 2692 | 243 | 239 | 98.3539 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | * | 95.1081 | 96.7894 | 93.4842 | 94.5833 | 1025 | 34 | 1033 | 72 | 18 | 25.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1076 | 99.0041 | 91.5063 | 65.9399 | 2187 | 22 | 2187 | 203 | 195 | 96.0591 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.1245 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.2536 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1063 | 93.9024 | 96.3415 | 90.6712 | 77 | 5 | 79 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | tv | HG002complexvar | homalt | 95.1060 | 90.6877 | 99.9768 | 19.5838 | 86254 | 8857 | 86277 | 20 | 16 | 80.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | het | 95.1055 | 95.6790 | 94.5388 | 84.7999 | 775 | 35 | 779 | 45 | 6 | 13.3333 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1049 | 91.8919 | 98.5507 | 79.7654 | 68 | 6 | 68 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1049 | 99.5122 | 91.0714 | 91.1567 | 204 | 1 | 204 | 20 | 15 | 75.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1049 | 99.5122 | 91.0714 | 91.1567 | 204 | 1 | 204 | 20 | 15 | 75.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1049 | 91.8919 | 98.5507 | 79.7654 | 68 | 6 | 68 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.1049 | 91.8919 | 98.5507 | 88.3051 | 136 | 12 | 136 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1038 | 91.2621 | 99.2832 | 83.3631 | 282 | 27 | 277 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.1028 | 94.4279 | 95.7874 | 61.2966 | 949 | 56 | 955 | 42 | 40 | 95.2381 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1018 | 91.5984 | 98.8839 | 61.3793 | 447 | 41 | 443 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | * | 95.1009 | 96.4912 | 93.7500 | 94.8882 | 165 | 6 | 165 | 11 | 1 | 9.0909 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1004 | 91.1765 | 99.3772 | 49.3237 | 1116 | 108 | 1117 | 7 | 6 | 85.7143 | |