PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27051-27100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | * | 95.1804 | 96.2979 | 94.0886 | 74.3752 | 47653 | 1832 | 47192 | 2965 | 284 | 9.5784 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | hetalt | 95.1803 | 94.0828 | 96.3038 | 77.4750 | 1272 | 80 | 1433 | 55 | 54 | 98.1818 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | * | 95.1788 | 93.1507 | 97.2973 | 90.6210 | 68 | 5 | 72 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1777 | 91.1321 | 99.5992 | 56.5331 | 483 | 47 | 497 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.1761 | 91.8265 | 98.7793 | 33.6573 | 2011 | 179 | 2023 | 25 | 22 | 88.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.1757 | 96.1815 | 94.1907 | 88.8007 | 2544 | 101 | 2578 | 159 | 6 | 3.7736 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.1753 | 97.5423 | 92.9204 | 74.8692 | 1786 | 45 | 1785 | 136 | 12 | 8.8235 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.1742 | 99.7330 | 91.0140 | 84.2317 | 1494 | 4 | 1499 | 148 | 98 | 66.2162 | |
| egarrison-hhga | INDEL | I6_15 | * | hetalt | 95.1738 | 91.5448 | 99.1023 | 37.9004 | 7828 | 723 | 7838 | 71 | 63 | 88.7324 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1732 | 94.9348 | 95.4128 | 68.8499 | 3861 | 206 | 3848 | 185 | 153 | 82.7027 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.1724 | 96.1517 | 94.2128 | 83.1481 | 1749 | 70 | 1514 | 93 | 61 | 65.5914 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.1724 | 96.1517 | 94.2128 | 83.1481 | 1749 | 70 | 1514 | 93 | 61 | 65.5914 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | het | 95.1716 | 95.6725 | 94.6759 | 91.3591 | 818 | 37 | 818 | 46 | 5 | 10.8696 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | het | 95.1709 | 95.0043 | 95.3380 | 79.9679 | 43093 | 2266 | 43129 | 2109 | 1058 | 50.1660 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | het | 95.1691 | 93.8095 | 96.5686 | 95.2536 | 197 | 13 | 197 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 95.1686 | 91.6276 | 98.9943 | 43.0908 | 1368 | 125 | 689 | 7 | 7 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1684 | 91.4205 | 99.2366 | 87.1594 | 1300 | 122 | 1300 | 10 | 3 | 30.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.1677 | 91.3978 | 99.2620 | 64.3890 | 255 | 24 | 269 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | het | 95.1644 | 96.5969 | 93.7738 | 84.6289 | 738 | 26 | 738 | 49 | 6 | 12.2449 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1642 | 98.7805 | 91.8033 | 88.0392 | 162 | 2 | 112 | 10 | 8 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1641 | 92.2330 | 98.2877 | 91.7561 | 285 | 24 | 287 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | HG002compoundhet | * | 95.1627 | 94.9733 | 95.3528 | 63.3096 | 28454 | 1506 | 28336 | 1381 | 1370 | 99.2035 | |
| ltrigg-rtg1 | INDEL | * | segdup | hetalt | 95.1613 | 90.7692 | 100.0000 | 95.6911 | 118 | 12 | 125 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | segdup | hetalt | 95.1613 | 90.7692 | 100.0000 | 94.5726 | 118 | 12 | 120 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 91.2449 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | * | 95.1613 | 96.7213 | 93.6508 | 96.0377 | 295 | 10 | 295 | 20 | 4 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 91.1234 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 89.6272 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.1611 | 91.0564 | 99.6533 | 48.4903 | 3146 | 309 | 3162 | 11 | 5 | 45.4545 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | homalt | 95.1607 | 99.2326 | 91.4099 | 54.5488 | 3362 | 26 | 3352 | 315 | 115 | 36.5079 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1596 | 93.2432 | 97.1564 | 60.5607 | 207 | 15 | 205 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | * | 95.1595 | 96.2807 | 94.0641 | 74.3570 | 47140 | 1821 | 46684 | 2946 | 281 | 9.5384 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 95.1589 | 98.8220 | 91.7576 | 91.8438 | 755 | 9 | 757 | 68 | 4 | 5.8824 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1588 | 93.9924 | 96.3545 | 65.5291 | 10858 | 694 | 10969 | 415 | 307 | 73.9759 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1588 | 93.9924 | 96.3545 | 65.5291 | 10858 | 694 | 10969 | 415 | 307 | 73.9759 | |
| jlack-gatk | SNP | tv | map_l125_m2_e0 | * | 95.1584 | 98.8841 | 91.7032 | 81.2684 | 16305 | 184 | 16303 | 1475 | 90 | 6.1017 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.1579 | 94.9718 | 95.3448 | 39.6821 | 3872 | 205 | 3871 | 189 | 179 | 94.7090 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 95.1579 | 91.8699 | 98.6900 | 87.1240 | 452 | 40 | 452 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.1577 | 91.3256 | 99.3255 | 38.6854 | 2990 | 284 | 8246 | 56 | 45 | 80.3571 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1575 | 94.0810 | 96.2589 | 56.4633 | 3020 | 190 | 3242 | 126 | 118 | 93.6508 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | * | 95.1569 | 95.6522 | 94.6667 | 96.8867 | 44 | 2 | 71 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | homalt | 95.1542 | 93.9130 | 96.4286 | 96.9449 | 108 | 7 | 108 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1542 | 93.1034 | 97.2973 | 86.5942 | 108 | 8 | 108 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | * | 95.1542 | 95.5752 | 94.7368 | 96.3798 | 108 | 5 | 108 | 6 | 1 | 16.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1520 | 92.7565 | 97.6744 | 76.4794 | 461 | 36 | 462 | 11 | 11 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.1518 | 97.8124 | 92.6322 | 56.2191 | 10865 | 243 | 11001 | 875 | 754 | 86.1714 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | het | 95.1515 | 92.8910 | 97.5248 | 95.5943 | 196 | 15 | 197 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1505 | 98.5769 | 91.9543 | 85.8273 | 4087 | 59 | 4103 | 359 | 47 | 13.0919 | |