PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26651-26700 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.3320 | 93.0894 | 97.6852 | 88.7676 | 229 | 17 | 211 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.3320 | 93.5417 | 97.1922 | 82.4555 | 449 | 31 | 450 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | hetalt | 95.3319 | 91.2708 | 99.7711 | 50.5352 | 22982 | 2198 | 23098 | 53 | 53 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | het | 95.3314 | 99.0570 | 91.8760 | 83.3511 | 18698 | 178 | 18694 | 1653 | 140 | 8.4695 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3300 | 94.5545 | 96.1183 | 76.3193 | 3820 | 220 | 3541 | 143 | 117 | 81.8182 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | * | 95.3298 | 96.2358 | 94.4406 | 89.8140 | 1355 | 53 | 1376 | 81 | 16 | 19.7531 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.3296 | 99.8474 | 91.2029 | 66.5610 | 3925 | 6 | 3753 | 362 | 12 | 3.3149 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.3282 | 91.7949 | 99.1445 | 40.6321 | 895 | 80 | 1043 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | * | 95.3280 | 96.1779 | 94.4929 | 89.8327 | 1384 | 55 | 1407 | 82 | 17 | 20.7317 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | * | 95.3278 | 97.9922 | 92.8044 | 87.6441 | 3514 | 72 | 3521 | 273 | 26 | 9.5238 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | hetalt | 95.3278 | 91.5310 | 99.4533 | 27.1869 | 7814 | 723 | 7823 | 43 | 37 | 86.0465 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.3273 | 91.1635 | 99.8897 | 40.2875 | 5375 | 521 | 5435 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.3273 | 91.1635 | 99.8897 | 40.2875 | 5375 | 521 | 5435 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | het | 95.3271 | 97.1429 | 93.5780 | 96.4748 | 204 | 6 | 204 | 14 | 2 | 14.2857 | |
| ckim-gatk | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | tech_badpromoters | * | 95.3271 | 97.4522 | 93.2927 | 57.8406 | 153 | 4 | 153 | 11 | 2 | 18.1818 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3267 | 97.5124 | 93.2367 | 89.1110 | 196 | 5 | 193 | 14 | 1 | 7.1429 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3253 | 93.9349 | 96.7576 | 72.9412 | 1270 | 82 | 1313 | 44 | 43 | 97.7273 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 95.3248 | 98.0720 | 92.7273 | 92.5454 | 763 | 15 | 765 | 60 | 6 | 10.0000 | |
| dgrover-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3242 | 93.9349 | 96.7552 | 73.1272 | 1270 | 82 | 1312 | 44 | 43 | 97.7273 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3233 | 94.2598 | 96.4111 | 77.4217 | 624 | 38 | 591 | 22 | 8 | 36.3636 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.3231 | 91.0641 | 100.0000 | 50.9552 | 1335 | 131 | 1335 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.3225 | 94.9541 | 95.6938 | 84.8606 | 414 | 22 | 400 | 18 | 4 | 22.2222 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 95.3203 | 97.4026 | 93.3251 | 86.4330 | 750 | 20 | 755 | 54 | 4 | 7.4074 | |
| jlack-gatk | INDEL | I1_5 | segdup | * | 95.3193 | 98.8669 | 92.0175 | 95.4565 | 1047 | 12 | 1049 | 91 | 3 | 3.2967 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | het | 95.3191 | 96.5517 | 94.1176 | 92.2018 | 28 | 1 | 32 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | het | 95.3187 | 95.8661 | 94.7776 | 86.8347 | 487 | 21 | 490 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.3176 | 99.5904 | 91.3963 | 41.9328 | 1945 | 8 | 1944 | 183 | 182 | 99.4536 | |
| jpowers-varprowl | INDEL | * | map_l100_m2_e0 | homalt | 95.3164 | 91.9905 | 98.8917 | 79.6672 | 1160 | 101 | 1160 | 13 | 8 | 61.5385 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | * | 95.3148 | 93.5278 | 97.1715 | 34.8185 | 8208 | 568 | 9894 | 288 | 283 | 98.2639 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.3132 | 95.4134 | 95.2131 | 38.5261 | 4535 | 218 | 4535 | 228 | 107 | 46.9298 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.3125 | 100.0000 | 91.0448 | 86.9776 | 122 | 0 | 122 | 12 | 11 | 91.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3125 | 92.4242 | 98.3871 | 97.2222 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3125 | 92.4242 | 98.3871 | 97.3195 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 95.3105 | 91.9315 | 98.9474 | 78.3927 | 1128 | 99 | 1128 | 12 | 8 | 66.6667 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | * | 95.3103 | 92.7251 | 98.0438 | 33.3983 | 8374 | 657 | 8370 | 167 | 162 | 97.0060 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | het | 95.3100 | 93.9476 | 96.7125 | 59.3663 | 1040 | 67 | 1265 | 43 | 36 | 83.7209 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | het | 95.3087 | 93.0070 | 97.7273 | 76.9231 | 133 | 10 | 129 | 3 | 1 | 33.3333 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3085 | 94.9832 | 95.6360 | 75.7457 | 13840 | 731 | 13850 | 632 | 351 | 55.5380 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3085 | 94.9832 | 95.6360 | 75.7457 | 13840 | 731 | 13850 | 632 | 351 | 55.5380 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 95.3077 | 95.1613 | 95.4545 | 87.8309 | 295 | 15 | 294 | 14 | 3 | 21.4286 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | het | 95.3077 | 97.5777 | 93.1409 | 79.2994 | 45762 | 1136 | 45178 | 3327 | 221 | 6.6426 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | hetalt | 95.3064 | 91.3328 | 99.6416 | 58.0293 | 1117 | 106 | 1112 | 4 | 4 | 100.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.3063 | 91.2223 | 99.7730 | 55.8289 | 10538 | 1014 | 10551 | 24 | 18 | 75.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.3063 | 91.2223 | 99.7730 | 55.8289 | 10538 | 1014 | 10551 | 24 | 18 | 75.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | het | 95.3061 | 92.7445 | 98.0132 | 89.7349 | 294 | 23 | 296 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3051 | 97.3787 | 93.3180 | 50.0419 | 4495 | 121 | 4455 | 319 | 10 | 3.1348 | |