PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26601-26650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3539 | 94.1988 | 96.5376 | 67.5442 | 4709 | 290 | 4963 | 178 | 155 | 87.0787 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.3524 | 95.1444 | 95.5614 | 69.5669 | 725 | 37 | 732 | 34 | 14 | 41.1765 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | homalt | 95.3524 | 92.6958 | 98.1659 | 89.1785 | 1231 | 97 | 1231 | 23 | 5 | 21.7391 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3517 | 93.1174 | 97.6959 | 79.6053 | 230 | 17 | 212 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e1 | homalt | 95.3495 | 91.6667 | 99.3407 | 90.2129 | 451 | 41 | 452 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 95.3488 | 97.6190 | 93.1818 | 89.9772 | 123 | 3 | 123 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.3488 | 91.1111 | 100.0000 | 95.5867 | 41 | 4 | 41 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | het | 95.3488 | 97.1564 | 93.6073 | 96.5517 | 205 | 6 | 205 | 14 | 2 | 14.2857 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 90.8686 | 41 | 4 | 41 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 87.3065 | 41 | 4 | 41 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | tech_badpromoters | het | 95.3488 | 93.1818 | 97.6190 | 48.7805 | 41 | 3 | 41 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.3488 | 93.1818 | 97.6190 | 73.0769 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.3488 | 93.1818 | 97.6190 | 96.9828 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.3488 | 93.1818 | 97.6190 | 96.9979 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.3481 | 96.0152 | 94.6903 | 79.5197 | 506 | 21 | 428 | 24 | 23 | 95.8333 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3478 | 97.8970 | 92.9280 | 84.6485 | 6517 | 140 | 6557 | 499 | 142 | 28.4569 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 95.3476 | 98.1168 | 92.7305 | 92.6905 | 521 | 10 | 523 | 41 | 4 | 9.7561 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.3473 | 94.4444 | 96.2675 | 68.4185 | 595 | 35 | 619 | 24 | 11 | 45.8333 | |
| jlack-gatk | INDEL | I16_PLUS | * | * | 95.3468 | 94.3077 | 96.4091 | 70.3461 | 6014 | 363 | 6014 | 224 | 155 | 69.1964 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3450 | 94.8485 | 95.8466 | 76.3952 | 313 | 17 | 300 | 13 | 7 | 53.8462 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 95.3441 | 92.5344 | 98.3299 | 81.7524 | 471 | 38 | 471 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 95.3440 | 98.3778 | 92.4918 | 89.2439 | 849 | 14 | 850 | 69 | 5 | 7.2464 | |
| ckim-dragen | INDEL | I16_PLUS | * | hetalt | 95.3433 | 91.2297 | 99.8454 | 58.3691 | 1914 | 184 | 1937 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | het | 95.3430 | 91.2887 | 99.7743 | 74.4189 | 1771 | 169 | 1768 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | * | 95.3427 | 97.9691 | 92.8535 | 88.3944 | 3618 | 75 | 3625 | 279 | 28 | 10.0358 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | het | 95.3423 | 94.3860 | 96.3183 | 91.2356 | 807 | 48 | 811 | 31 | 4 | 12.9032 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.3421 | 93.0894 | 97.7064 | 87.3182 | 229 | 17 | 213 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | segdup | het | 95.3418 | 99.2565 | 91.7241 | 96.0707 | 534 | 4 | 532 | 48 | 1 | 2.0833 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3413 | 97.5610 | 93.2203 | 88.0081 | 160 | 4 | 110 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.3412 | 95.1435 | 95.5397 | 38.5245 | 3879 | 198 | 3877 | 181 | 170 | 93.9227 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | * | 95.3410 | 97.9233 | 92.8914 | 88.4293 | 3678 | 78 | 3685 | 282 | 30 | 10.6383 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | homalt | 95.3393 | 92.6868 | 98.1481 | 96.7438 | 583 | 46 | 583 | 11 | 5 | 45.4545 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3387 | 95.0659 | 95.6131 | 74.9211 | 2524 | 131 | 2659 | 122 | 56 | 45.9016 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3376 | 93.0985 | 97.6870 | 52.9536 | 3251 | 241 | 3252 | 77 | 70 | 90.9091 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3372 | 98.5927 | 92.2897 | 84.7602 | 10649 | 152 | 10677 | 892 | 112 | 12.5561 | |
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | het | 95.3358 | 98.5019 | 92.3669 | 91.9308 | 1315 | 20 | 1319 | 109 | 7 | 6.4220 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3357 | 93.9394 | 96.7742 | 87.8431 | 62 | 4 | 60 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3347 | 93.7357 | 96.9893 | 65.2412 | 9442 | 631 | 9310 | 289 | 255 | 88.2353 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.3338 | 91.6933 | 99.2754 | 35.5140 | 287 | 26 | 137 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | * | 95.3330 | 97.2027 | 93.5339 | 77.3132 | 21162 | 609 | 20989 | 1451 | 95 | 6.5472 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.3327 | 99.7921 | 91.2548 | 72.8866 | 480 | 1 | 480 | 46 | 1 | 2.1739 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3323 | 98.0732 | 92.7405 | 92.6709 | 509 | 10 | 511 | 40 | 4 | 10.0000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.3321 | 99.2576 | 91.7054 | 59.1877 | 10027 | 75 | 10072 | 911 | 306 | 33.5895 | |