PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26251-26300 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2587 | 32 | 3 | 25 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.5224 | 91.4286 | 100.0000 | 92.2892 | 32 | 3 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.5224 | 94.1176 | 96.9697 | 95.0376 | 32 | 2 | 32 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4384 | 32 | 3 | 25 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.0394 | 32 | 3 | 25 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.5224 | 100.0000 | 91.4286 | 46.0154 | 192 | 0 | 192 | 18 | 17 | 94.4444 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 90.8425 | 32 | 3 | 25 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2281 | 32 | 3 | 25 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.5224 | 91.4286 | 100.0000 | 84.9765 | 32 | 3 | 32 | 0 | 0 | ||
| cchapple-custom | SNP | tv | tech_badpromoters | het | 95.5224 | 96.9697 | 94.1176 | 64.2105 | 32 | 1 | 32 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 95.5224 | 100.0000 | 91.4286 | 95.5013 | 32 | 0 | 32 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5224 | 99.6844 | 91.6941 | 50.1544 | 4738 | 15 | 4736 | 429 | 428 | 99.7669 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.7085 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2892 | 32 | 3 | 25 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 95.5224 | 92.5620 | 98.6784 | 85.2693 | 224 | 18 | 224 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4966 | 32 | 3 | 25 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2281 | 32 | 3 | 25 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5224 | 95.0495 | 96.0000 | 93.4037 | 96 | 5 | 96 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | * | 95.5217 | 95.2157 | 95.8298 | 35.3889 | 2229 | 112 | 2229 | 97 | 95 | 97.9381 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | het | 95.5194 | 95.3171 | 95.7225 | 80.1164 | 29188 | 1434 | 29226 | 1306 | 667 | 51.0720 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.5192 | 92.2414 | 99.0385 | 81.8815 | 107 | 9 | 103 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | het | 95.5179 | 98.1534 | 93.0201 | 92.7409 | 1382 | 26 | 1386 | 104 | 7 | 6.7308 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.5179 | 97.5818 | 93.5395 | 36.9311 | 686 | 17 | 1361 | 94 | 10 | 10.6383 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.5177 | 91.4612 | 99.9507 | 31.0075 | 2003 | 187 | 2026 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5172 | 97.8799 | 93.2660 | 69.8477 | 277 | 6 | 277 | 20 | 20 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | het | 95.5171 | 97.5509 | 93.5664 | 77.7177 | 9878 | 248 | 9904 | 681 | 116 | 17.0338 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.5170 | 96.4240 | 94.6270 | 76.4781 | 6013 | 223 | 6076 | 345 | 14 | 4.0580 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5161 | 92.6267 | 98.5915 | 44.5312 | 201 | 16 | 210 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | * | * | hetalt | 95.5159 | 91.6749 | 99.6928 | 55.9040 | 23136 | 2101 | 23365 | 72 | 70 | 97.2222 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | * | 95.5153 | 95.0355 | 96.0000 | 91.5044 | 4824 | 252 | 4824 | 201 | 59 | 29.3532 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | * | 95.5142 | 92.0415 | 99.2593 | 85.2378 | 266 | 23 | 268 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5134 | 92.4528 | 98.7835 | 71.4781 | 98 | 8 | 406 | 5 | 2 | 40.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 95.5127 | 98.1481 | 93.0151 | 89.6916 | 795 | 15 | 799 | 60 | 4 | 6.6667 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | * | 95.5110 | 97.2763 | 93.8086 | 94.9219 | 500 | 14 | 500 | 33 | 2 | 6.0606 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | * | 95.5097 | 94.0511 | 97.0142 | 77.3448 | 70291 | 4446 | 70312 | 2164 | 1091 | 50.4159 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.5076 | 97.4127 | 93.6755 | 70.3048 | 753 | 20 | 1022 | 69 | 54 | 78.2609 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | * | 95.5075 | 94.0984 | 96.9595 | 95.4215 | 287 | 18 | 287 | 9 | 3 | 33.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.5070 | 99.9434 | 91.4477 | 66.7295 | 1766 | 1 | 1775 | 166 | 104 | 62.6506 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | * | 95.5056 | 100.0000 | 91.3978 | 56.9444 | 85 | 0 | 85 | 8 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | homalt | 95.5056 | 94.4444 | 96.5909 | 86.3142 | 85 | 5 | 85 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5056 | 92.3913 | 98.8372 | 69.0647 | 85 | 7 | 85 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5056 | 97.7103 | 93.3982 | 67.8398 | 17411 | 408 | 17274 | 1221 | 1162 | 95.1679 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5049 | 92.7033 | 98.4810 | 62.0192 | 775 | 61 | 778 | 12 | 8 | 66.6667 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | * | 95.5047 | 95.0280 | 95.9863 | 91.4473 | 4759 | 249 | 4759 | 199 | 57 | 28.6432 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002compoundhet | * | 95.5047 | 92.1828 | 99.0749 | 28.5997 | 2158 | 183 | 2142 | 20 | 20 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5044 | 99.5907 | 91.7402 | 55.4244 | 1460 | 6 | 1455 | 131 | 24 | 18.3206 | |