PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26001-26050 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 86.5854 | 11 | 1 | 11 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 75.2809 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.2453 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.4393 | 22 | 2 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2000 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | homalt | 95.6522 | 91.6667 | 100.0000 | 54.1667 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 97.1095 | 44 | 1 | 44 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.6522 | 93.6813 | 97.7077 | 82.5500 | 341 | 23 | 341 | 8 | 1 | 12.5000 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 63.2653 | 33 | 0 | 33 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 91.0714 | 44 | 4 | 45 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 73.8095 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6522 | 100.0000 | 91.6667 | 87.3684 | 22 | 0 | 22 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.2450 | 11 | 1 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 92.8571 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 95.6522 | 92.9577 | 98.5075 | 89.2456 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 84.9771 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 71.0526 | 11 | 1 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 74.7423 | 99 | 9 | 98 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6522 | 91.6667 | 100.0000 | 81.6667 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 81.6667 | 11 | 1 | 11 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 87.3563 | 11 | 1 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | segdup | hetalt | 95.6522 | 91.6667 | 100.0000 | 96.7407 | 44 | 4 | 44 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.3636 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | * | 95.6512 | 99.5927 | 92.0098 | 83.3079 | 4157 | 17 | 4134 | 359 | 8 | 2.2284 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e1 | het | 95.6493 | 95.5844 | 95.7143 | 92.3154 | 736 | 34 | 737 | 33 | 3 | 9.0909 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6491 | 95.3947 | 95.9048 | 73.2348 | 2030 | 98 | 2014 | 86 | 77 | 89.5349 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.6489 | 94.8485 | 96.4630 | 73.3505 | 313 | 17 | 300 | 11 | 5 | 45.4545 | |
| gduggal-snapplat | SNP | ti | HG002compoundhet | homalt | 95.6482 | 94.5361 | 96.7868 | 36.7388 | 6990 | 404 | 6928 | 230 | 158 | 68.6957 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6451 | 94.1259 | 97.2141 | 69.2007 | 2003 | 125 | 1989 | 57 | 51 | 89.4737 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | * | 95.6449 | 95.8065 | 95.4839 | 89.2324 | 297 | 13 | 296 | 14 | 4 | 28.5714 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6445 | 93.2160 | 98.2030 | 39.3698 | 1800 | 131 | 2022 | 37 | 31 | 83.7838 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6445 | 93.2160 | 98.2030 | 39.3698 | 1800 | 131 | 2022 | 37 | 31 | 83.7838 | |
| astatham-gatk | INDEL | * | map_l125_m0_e0 | het | 95.6440 | 95.2300 | 96.0616 | 91.1381 | 559 | 28 | 561 | 23 | 2 | 8.6957 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 95.6413 | 91.6793 | 99.9612 | 55.8202 | 10247 | 930 | 10308 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6412 | 98.4962 | 92.9471 | 83.5315 | 1310 | 20 | 1107 | 84 | 79 | 94.0476 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | het | 95.6400 | 97.2699 | 94.0639 | 78.7568 | 29786 | 836 | 29537 | 1864 | 142 | 7.6180 | |
| ckim-isaac | SNP | * | HG002complexvar | homalt | 95.6391 | 91.6604 | 99.9788 | 17.3239 | 264509 | 24066 | 264563 | 56 | 45 | 80.3571 | |
| jlack-gatk | INDEL | * | map_siren | het | 95.6389 | 98.6025 | 92.8482 | 85.9136 | 4445 | 63 | 4453 | 343 | 22 | 6.4140 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | homalt | 95.6387 | 92.2561 | 99.2788 | 92.8119 | 2478 | 208 | 2478 | 18 | 10 | 55.5556 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.6386 | 91.6418 | 100.0000 | 68.0583 | 307 | 28 | 329 | 0 | 0 | ||