PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25151-25200 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.7295 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 96.0000 | 98.2456 | 93.8547 | 95.4775 | 168 | 3 | 168 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.6471 | 36 | 3 | 36 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 61.5385 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.2927 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 70.0000 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.1429 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.7085 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 97.8003 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 96.5699 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | * | 96.0000 | 95.4545 | 96.5517 | 89.8325 | 252 | 12 | 252 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 93.0726 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8188 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.6471 | 36 | 3 | 36 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 90.0000 | 24 | 2 | 24 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.1212 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0000 | 94.7368 | 97.2973 | 96.7401 | 108 | 6 | 108 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.0476 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.0986 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.0986 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.4477 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 92.3977 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.7500 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.5709 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4474 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 58.6207 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.5312 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | decoy | * | 96.0000 | 100.0000 | 92.3077 | 99.7796 | 4 | 0 | 12 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.0000 | 92.3077 | 100.0000 | 20.0000 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | * | 96.0000 | 92.3077 | 100.0000 | 47.8261 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.1429 | 12 | 1 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.9996 | 94.3320 | 97.7273 | 81.2766 | 233 | 14 | 215 | 5 | 3 | 60.0000 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | het | 95.9987 | 96.7583 | 95.2510 | 80.3175 | 11969 | 401 | 11974 | 597 | 158 | 26.4657 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | homalt | 95.9985 | 93.5065 | 98.6270 | 83.6268 | 432 | 30 | 431 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9984 | 96.9697 | 95.0464 | 75.6777 | 320 | 10 | 307 | 16 | 12 | 75.0000 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | * | 95.9984 | 95.3950 | 96.6095 | 81.4997 | 7499 | 362 | 7494 | 263 | 77 | 29.2776 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9978 | 94.1236 | 97.9483 | 47.9502 | 6503 | 406 | 8593 | 180 | 169 | 93.8889 | |
| bgallagher-sentieon | INDEL | * | * | hetalt | 95.9976 | 92.5387 | 99.7251 | 56.9311 | 23354 | 1883 | 23582 | 65 | 64 | 98.4615 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9970 | 93.0118 | 99.1803 | 34.2571 | 1504 | 113 | 1694 | 14 | 14 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | * | 95.9962 | 92.3844 | 99.9019 | 96.4456 | 1019 | 84 | 1018 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | * | hetalt | 95.9951 | 94.8454 | 97.1731 | 52.0745 | 552 | 30 | 550 | 16 | 15 | 93.7500 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.9942 | 94.5946 | 97.4359 | 91.7021 | 35 | 2 | 38 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | * | 95.9940 | 92.7007 | 99.5298 | 87.7555 | 1270 | 100 | 1270 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9937 | 93.4578 | 98.6711 | 50.7411 | 6457 | 452 | 6460 | 87 | 83 | 95.4023 | |