PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24751-24800 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1468 | 92.6189 | 99.9541 | 23.6736 | 4304 | 343 | 4357 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1468 | 95.2727 | 97.0370 | 87.9086 | 262 | 13 | 262 | 8 | 2 | 25.0000 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | homalt | 96.1466 | 99.1282 | 93.3392 | 44.8696 | 10688 | 94 | 10692 | 763 | 275 | 36.0419 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1462 | 92.9163 | 99.6087 | 28.2901 | 12789 | 975 | 12983 | 51 | 51 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 96.1457 | 95.6522 | 96.6443 | 87.6707 | 286 | 13 | 288 | 10 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1455 | 99.1325 | 93.3333 | 89.3667 | 1257 | 11 | 1260 | 90 | 6 | 6.6667 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | het | 96.1447 | 97.3583 | 94.9610 | 78.6712 | 28857 | 783 | 28890 | 1533 | 346 | 22.5701 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1445 | 93.5484 | 98.8889 | 67.7996 | 174 | 12 | 178 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1443 | 94.3879 | 97.9673 | 65.1092 | 2506 | 149 | 2458 | 51 | 44 | 86.2745 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.1440 | 99.4681 | 93.0348 | 67.3701 | 187 | 1 | 187 | 14 | 13 | 92.8571 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1413 | 92.8877 | 99.6311 | 33.7242 | 13034 | 998 | 13234 | 49 | 49 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l100_m1_e0 | * | 96.1408 | 99.1511 | 93.3080 | 76.0138 | 24293 | 208 | 24289 | 1742 | 100 | 5.7405 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | * | 96.1407 | 94.9417 | 97.3704 | 66.4075 | 11731 | 625 | 11738 | 317 | 315 | 99.3691 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1405 | 97.7087 | 94.6218 | 72.0263 | 597 | 14 | 563 | 32 | 32 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | * | 96.1403 | 93.3934 | 99.0536 | 93.2003 | 311 | 22 | 314 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1399 | 92.8943 | 99.6204 | 36.5756 | 15518 | 1187 | 15746 | 60 | 60 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1399 | 92.8943 | 99.6204 | 36.5756 | 15518 | 1187 | 15746 | 60 | 60 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1390 | 94.3182 | 98.0315 | 84.0452 | 249 | 15 | 249 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1386 | 98.5696 | 93.8246 | 90.4219 | 2274 | 33 | 2279 | 150 | 14 | 9.3333 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.1382 | 99.7890 | 92.7451 | 61.9630 | 2365 | 5 | 2365 | 185 | 184 | 99.4595 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1377 | 92.8872 | 99.6239 | 30.9811 | 12785 | 979 | 12979 | 49 | 49 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1375 | 92.6622 | 99.8837 | 34.9962 | 1528 | 121 | 1718 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 91.3883 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 92.8129 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | homalt | 96.1368 | 97.4359 | 94.8718 | 56.1798 | 38 | 1 | 37 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1367 | 97.7011 | 94.6215 | 65.4983 | 425 | 10 | 475 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.1365 | 93.1900 | 99.2754 | 67.6056 | 260 | 19 | 274 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 87.7907 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.2463 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 89.0815 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.0682 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | het | 96.1330 | 95.6220 | 96.6495 | 82.3053 | 2206 | 101 | 3000 | 104 | 69 | 66.3462 | |
| hfeng-pmm1 | INDEL | D6_15 | segdup | het | 96.1326 | 94.5652 | 97.7528 | 94.0067 | 87 | 5 | 87 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | homalt | 96.1326 | 93.5484 | 98.8636 | 82.1138 | 348 | 24 | 348 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.1316 | 98.7261 | 93.6699 | 89.5668 | 1240 | 16 | 1243 | 84 | 6 | 7.1429 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 96.1316 | 98.7752 | 93.6258 | 90.6812 | 1129 | 14 | 1131 | 77 | 6 | 7.7922 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.1312 | 95.1667 | 97.1154 | 62.9013 | 3682 | 187 | 3636 | 108 | 104 | 96.2963 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1311 | 92.6743 | 99.8558 | 64.0650 | 5503 | 435 | 5540 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | I6_15 | * | * | 96.1308 | 95.2745 | 97.0025 | 53.1865 | 23650 | 1173 | 23656 | 731 | 625 | 85.4993 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | * | 96.1308 | 95.7609 | 96.5035 | 93.5147 | 1378 | 61 | 1380 | 50 | 7 | 14.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1302 | 92.8764 | 99.6203 | 36.5800 | 15515 | 1190 | 15743 | 60 | 60 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1302 | 92.8764 | 99.6203 | 36.5800 | 15515 | 1190 | 15743 | 60 | 60 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1286 | 95.3020 | 96.9697 | 78.0731 | 142 | 7 | 128 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | het | 96.1263 | 92.6552 | 99.8676 | 76.8996 | 3015 | 239 | 3018 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | I1_5 | * | homalt | 96.1261 | 97.6964 | 94.6055 | 51.8219 | 59036 | 1392 | 58978 | 3363 | 3305 | 98.2753 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | hetalt | 96.1260 | 92.8027 | 99.6962 | 58.0768 | 1947 | 151 | 1969 | 6 | 6 | 100.0000 | |