PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24201-24250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3290 | 93.2318 | 99.6390 | 71.5167 | 551 | 40 | 552 | 2 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.3287 | 96.4131 | 96.2444 | 58.5642 | 3790 | 141 | 3844 | 150 | 63 | 42.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.3282 | 93.7975 | 98.9993 | 46.0791 | 1482 | 98 | 1484 | 15 | 2 | 13.3333 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | * | 96.3274 | 97.0614 | 95.6045 | 79.4325 | 11164 | 338 | 11158 | 513 | 83 | 16.1793 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | het | 96.3272 | 98.5786 | 94.1762 | 82.3918 | 12484 | 180 | 12484 | 772 | 162 | 20.9845 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3271 | 94.3866 | 98.3491 | 65.6458 | 2085 | 124 | 2085 | 35 | 29 | 82.8571 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.3269 | 96.0452 | 96.6102 | 70.0508 | 170 | 7 | 171 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3265 | 95.1613 | 97.5207 | 90.8055 | 118 | 6 | 118 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | * | 96.3262 | 95.9877 | 96.6670 | 77.7511 | 19689 | 823 | 19693 | 679 | 349 | 51.3991 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.3260 | 97.5610 | 95.1220 | 92.6391 | 40 | 1 | 39 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3257 | 95.6607 | 97.0000 | 82.2127 | 485 | 22 | 485 | 15 | 15 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3255 | 93.2427 | 99.6191 | 24.9186 | 7548 | 547 | 7585 | 29 | 29 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3250 | 96.5116 | 96.1390 | 87.0110 | 249 | 9 | 249 | 10 | 2 | 20.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | * | 96.3250 | 96.2326 | 96.4176 | 78.3427 | 30652 | 1200 | 30655 | 1139 | 529 | 46.4442 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | * | 96.3245 | 97.4359 | 95.2381 | 98.9802 | 76 | 2 | 140 | 7 | 4 | 57.1429 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3240 | 95.7792 | 96.8750 | 60.5835 | 1180 | 52 | 1178 | 38 | 26 | 68.4211 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | * | 96.3239 | 94.1634 | 98.5859 | 85.8854 | 484 | 30 | 488 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3238 | 96.5464 | 96.1023 | 63.4311 | 27284 | 976 | 27270 | 1106 | 763 | 68.9873 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.3231 | 97.9202 | 94.7773 | 65.7410 | 14313 | 304 | 13937 | 768 | 672 | 87.5000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | homalt | 96.3229 | 94.7115 | 97.9899 | 73.6074 | 197 | 11 | 195 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | het | 96.3204 | 96.5141 | 96.1274 | 80.0949 | 10078 | 364 | 10078 | 406 | 94 | 23.1527 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.3194 | 97.8377 | 94.8474 | 67.7840 | 3846 | 85 | 3792 | 206 | 24 | 11.6505 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | homalt | 96.3193 | 96.9522 | 95.6946 | 54.2209 | 1177 | 37 | 1178 | 53 | 36 | 67.9245 | |
| astatham-gatk | INDEL | * | map_siren | het | 96.3193 | 94.2990 | 98.4281 | 84.3550 | 4251 | 257 | 4258 | 68 | 8 | 11.7647 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3190 | 93.1715 | 99.6865 | 67.9236 | 614 | 45 | 636 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3190 | 93.1715 | 99.6865 | 67.9236 | 614 | 45 | 636 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | * | 96.3189 | 96.6711 | 95.9692 | 79.3481 | 10977 | 378 | 10976 | 461 | 180 | 39.0456 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 96.3174 | 96.1938 | 96.4413 | 59.2754 | 278 | 11 | 271 | 10 | 9 | 90.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | het | 96.3171 | 94.3089 | 98.4127 | 66.5304 | 1044 | 63 | 806 | 13 | 7 | 53.8462 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | het | 96.3159 | 97.1831 | 95.4641 | 88.2397 | 2277 | 66 | 2273 | 108 | 10 | 9.2593 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3159 | 93.2216 | 99.6227 | 27.1443 | 7619 | 554 | 7658 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | het | 96.3156 | 96.0340 | 96.5990 | 77.1422 | 20364 | 841 | 20365 | 717 | 214 | 29.8466 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.3154 | 93.3884 | 99.4318 | 53.2537 | 339 | 24 | 350 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3146 | 92.8912 | 100.0000 | 26.9952 | 7592 | 581 | 7629 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m2_e1 | het | 96.3138 | 98.0926 | 94.5983 | 75.6213 | 15634 | 304 | 15674 | 895 | 134 | 14.9721 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 62.5000 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.9718 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.9718 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.7021 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | hetalt | 96.3126 | 93.0160 | 99.8515 | 37.8079 | 1798 | 135 | 2017 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.3121 | 98.9474 | 93.8136 | 84.0303 | 1316 | 14 | 1107 | 73 | 64 | 87.6712 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | homalt | 96.3119 | 95.0104 | 97.6496 | 92.1345 | 457 | 24 | 457 | 11 | 8 | 72.7273 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3117 | 93.2057 | 99.6319 | 25.1721 | 7545 | 550 | 7579 | 28 | 28 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 96.3108 | 96.0452 | 96.5779 | 89.6130 | 510 | 21 | 508 | 18 | 3 | 16.6667 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3107 | 96.1240 | 96.4981 | 87.2076 | 248 | 10 | 248 | 9 | 2 | 22.2222 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3100 | 99.6183 | 93.2143 | 76.1499 | 522 | 2 | 522 | 38 | 20 | 52.6316 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | * | 96.3093 | 96.4489 | 96.1702 | 91.3225 | 1358 | 50 | 1356 | 54 | 9 | 16.6667 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | homalt | 96.3093 | 96.7164 | 95.9056 | 58.3612 | 10250 | 348 | 10283 | 439 | 309 | 70.3872 | |