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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
24051-24100 / 86044 show all
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3867
94.8287
97.9968
59.1527
304416630336260
96.7742
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.3866
96.7594
96.0167
76.6953
48371624821200138
69.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.3866
96.7594
96.0167
76.6953
48371624821200138
69.0000
ckim-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
96.3855
95.2381
97.5610
89.5939
4024010
0.0000
ltrigg-rtg2SNP*map_l100_m2_e1hetalt
96.3855
93.0233
100.0000
65.5172
4034000
egarrison-hhgaINDEL*map_l250_m2_e1*
96.3855
96.0961
96.6767
99.5385
32013320113
27.2727
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
96.3855
95.2381
97.5610
89.5939
4024010
0.0000
dgrover-gatkINDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
93.3665
4034000
hfeng-pmm1INDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
93.5065
4034000
bgallagher-sentieonINDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
92.6874
4034000
astatham-gatkINDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
93.2660
4034000
ltrigg-rtg2SNPtvmap_l100_m2_e1hetalt
96.3855
93.0233
100.0000
65.5172
4034000
ndellapenna-hhgaINDEL*map_l250_m2_e1*
96.3855
96.0961
96.6767
99.5648
32013320113
27.2727
raldana-dualsentieonINDELD6_15map_l125_m2_e1*
96.3855
93.7500
99.1736
88.0788
120812011
100.0000
raldana-dualsentieonSNP*map_l100_m2_e0hetalt
96.3855
95.2381
97.5610
68.4615
4024011
100.0000
raldana-dualsentieonSNPtvmap_l100_m2_e0hetalt
96.3855
95.2381
97.5610
68.4615
4024011
100.0000
ckim-dragenINDELD1_5map_l125_m1_e0het
96.3840
97.3829
95.4054
88.2297
70719706343
8.8235
jli-customINDELI16_PLUS*hetalt
96.3839
93.3270
99.6479
53.7674
1958140198177
100.0000
ciseli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
96.3834
97.8844
94.9277
48.0419
39798640052143
1.4019
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.3833
94.7646
98.0583
61.6187
251613925255025
50.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.3827
95.6865
97.0892
81.8383
20639320686226
41.9355
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3822
94.2153
98.6511
52.7880
329020232914538
84.4444
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.3822
94.6628
98.1651
78.9575
228812922474219
45.2381
gduggal-snapfbINDELD1_5map_sirenhet
96.3818
97.5406
95.2502
79.8220
222156224611213
11.6071
ndellapenna-hhgaINDELI1_5HG002complexvarhetalt
96.3808
94.4380
98.4052
70.6127
16309616662726
96.2963
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.3802
93.5166
99.4246
60.9201
164291139165889615
15.6250
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.3802
99.4681
93.4783
60.2735
561310327270
97.2222
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.3799
94.7426
98.0747
85.1647
865488661710
58.8235
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.3797
98.5411
94.3110
80.2460
297244298418015
8.3333
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3796
95.3528
97.4288
66.7644
3878189386510294
92.1569
jlack-gatkSNPtimap_l100_m1_e0het
96.3792
99.2318
93.6859
77.4968
29712230297052002175
8.7413
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.3782
97.2964
95.4772
69.1463
287980287113612
8.8235
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
96.3782
94.1935
98.6667
81.3665
146914822
100.0000
gduggal-bwafbINDEL*map_l150_m1_e0*
96.3775
95.2915
97.4886
88.7239
1275631281337
21.2121
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3774
93.8671
99.0257
55.4228
365823936593629
80.5556
gduggal-bwafbINDEL*HG002complexvarhet
96.3773
93.9496
98.9337
53.9146
43416279646670503367
72.9622
mlin-fermikitINDELI1_5HG002complexvar*
96.3771
95.3032
97.4754
51.5661
31796156731622819800
97.6801
rpoplin-dv42INDEL*map_l250_m2_e1*
96.3746
95.7958
96.9605
99.6645
31914319105
50.0000
ckim-dragenINDELD1_5map_l125_m2_e0het
96.3746
97.5131
95.2625
88.9141
74519744373
8.1081
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.3746
94.5455
98.2759
71.1443
5235711
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50het
96.3741
93.2180
99.7514
32.0838
1993145200650
0.0000
rpoplin-dv42INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
96.3740
94.1935
98.6577
81.7625
146914721
50.0000
ndellapenna-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
96.3740
94.1935
98.6577
81.6728
146914722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.3739
93.3105
99.6454
63.1854
5443956222
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.3738
93.6948
99.2105
23.7713
7435075466
100.0000
jli-customINDELD6_15map_sirenhetalt
96.3731
93.9394
98.9362
75.0000
9369310
0.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3724
94.0724
98.7877
56.0658
366623136674539
86.6667
gduggal-snapfbSNPtvmap_l125_m2_e0het
96.3724
97.9506
94.8442
74.2096
1022821410228556207
37.2302
raldana-dualsentieonINDELD16_PLUSHG002compoundhethetalt
96.3719
92.9979
100.0000
26.0481
1793135190500
ltrigg-rtg1INDELI1_5map_l125_m2_e0het
96.3718
93.5614
99.3562
78.9331
4653246330
0.0000