PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23901-23950 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4383 | 94.0202 | 98.9840 | 57.6608 | 2044 | 130 | 2046 | 21 | 14 | 66.6667 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4383 | 96.3424 | 96.5343 | 67.6863 | 41750 | 1585 | 44400 | 1594 | 1079 | 67.6913 | |
| gduggal-bwavard | SNP | ti | map_siren | het | 96.4374 | 96.7603 | 96.1167 | 68.4382 | 60361 | 2021 | 59849 | 2418 | 250 | 10.3391 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.4362 | 95.6140 | 97.2727 | 79.8165 | 109 | 5 | 107 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.4362 | 95.5112 | 97.3793 | 65.7857 | 383 | 18 | 706 | 19 | 18 | 94.7368 | |
| hfeng-pmm1 | INDEL | * | map_siren | hetalt | 96.4361 | 93.1174 | 100.0000 | 87.5803 | 230 | 17 | 232 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | het | 96.4360 | 95.8433 | 97.0362 | 82.0973 | 12474 | 541 | 12474 | 381 | 131 | 34.3832 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.4353 | 99.2278 | 93.7956 | 60.2322 | 257 | 2 | 257 | 17 | 16 | 94.1176 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.4353 | 98.9474 | 94.0476 | 61.8340 | 846 | 9 | 869 | 55 | 1 | 1.8182 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | het | 96.4352 | 97.1970 | 95.6851 | 78.2763 | 18552 | 535 | 18561 | 837 | 229 | 27.3596 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4351 | 94.7749 | 98.1545 | 42.9464 | 6548 | 361 | 6542 | 123 | 88 | 71.5447 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | het | 96.4350 | 97.4359 | 95.4545 | 91.6031 | 38 | 1 | 42 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.4348 | 93.5685 | 99.4824 | 26.5399 | 1804 | 124 | 1922 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | het | 96.4347 | 94.4444 | 98.5106 | 85.0794 | 459 | 27 | 463 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | homalt | 96.4345 | 93.9712 | 99.0305 | 81.0846 | 717 | 46 | 715 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.4344 | 93.1143 | 100.0000 | 27.8227 | 3543 | 262 | 3567 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4342 | 95.8599 | 97.0154 | 57.1729 | 27090 | 1170 | 27077 | 833 | 772 | 92.6771 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.4342 | 93.1731 | 99.9319 | 40.7661 | 2907 | 213 | 2936 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | * | hetalt | 96.4340 | 93.1353 | 99.9750 | 38.6184 | 7964 | 587 | 8004 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4336 | 93.7500 | 99.2754 | 88.7163 | 150 | 10 | 137 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002compoundhet | hetalt | 96.4336 | 93.1377 | 99.9714 | 55.3771 | 10410 | 767 | 10470 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4333 | 99.6568 | 93.4119 | 74.1305 | 1742 | 6 | 1744 | 123 | 51 | 41.4634 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | het | 96.4331 | 97.5578 | 95.3341 | 73.4403 | 28602 | 716 | 28605 | 1400 | 602 | 43.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.4322 | 96.6365 | 96.2287 | 73.8133 | 747 | 26 | 791 | 31 | 21 | 67.7419 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | * | 96.4309 | 96.3734 | 96.4883 | 71.4997 | 31650 | 1191 | 31653 | 1152 | 513 | 44.5312 | |
| bgallagher-sentieon | INDEL | I1_5 | * | hetalt | 96.4303 | 93.1398 | 99.9619 | 60.7048 | 10427 | 768 | 10489 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | het | 96.4300 | 95.8311 | 97.0364 | 82.0218 | 12344 | 537 | 12344 | 377 | 130 | 34.4828 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.4295 | 98.6456 | 94.3107 | 36.3510 | 437 | 6 | 431 | 26 | 11 | 42.3077 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 92.0354 | 27 | 2 | 27 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 89.5911 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.5425 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 96.8581 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 96.4286 | 93.1034 | 100.0000 | 95.6240 | 27 | 2 | 27 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | * | 96.4286 | 97.3770 | 95.4984 | 94.9050 | 297 | 8 | 297 | 14 | 4 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 96.4286 | 96.4286 | 96.4286 | 95.7382 | 27 | 1 | 27 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.1173 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | het | 96.4286 | 93.1034 | 100.0000 | 89.3281 | 27 | 2 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | hetalt | 96.4286 | 93.1034 | 100.0000 | 61.9718 | 27 | 2 | 27 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 88.9328 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.3098 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.7147 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 90.0369 | 27 | 2 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.9913 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | * | 96.4277 | 97.4269 | 95.4487 | 73.9277 | 70540 | 1863 | 69564 | 3317 | 236 | 7.1149 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4276 | 94.3750 | 98.5714 | 88.7910 | 151 | 9 | 138 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4272 | 98.7275 | 94.2317 | 67.6240 | 1862 | 24 | 1944 | 119 | 18 | 15.1261 | |
| jlack-gatk | SNP | ti | map_l100_m2_e1 | het | 96.4266 | 99.2506 | 93.7588 | 78.7315 | 30728 | 232 | 30721 | 2045 | 177 | 8.6553 | |