PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23301-23350 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.6131 | 94.3079 | 99.0337 | 49.0411 | 5832 | 352 | 5842 | 57 | 26 | 45.6140 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002complexvar | hetalt | 96.6129 | 94.0904 | 99.2745 | 71.2548 | 1624 | 102 | 1642 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | homalt | 96.6127 | 93.9349 | 99.4477 | 77.1281 | 3841 | 248 | 3781 | 21 | 16 | 76.1905 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.6125 | 96.9110 | 96.3159 | 71.1607 | 3451 | 110 | 3451 | 132 | 77 | 58.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 96.6121 | 93.9189 | 99.4643 | 83.9725 | 556 | 36 | 557 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | tv | map_l125_m2_e0 | * | 96.6110 | 97.3619 | 95.8717 | 75.9113 | 16054 | 435 | 16047 | 691 | 117 | 16.9320 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | het | 96.6102 | 96.6102 | 96.6102 | 89.1144 | 57 | 2 | 57 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6102 | 94.2149 | 99.1304 | 93.9633 | 114 | 7 | 114 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | het | 96.6102 | 93.4426 | 100.0000 | 90.3654 | 114 | 8 | 116 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | * | hetalt | 96.6097 | 93.4744 | 99.9627 | 39.2455 | 7993 | 558 | 8033 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.6093 | 96.3303 | 96.8900 | 85.7581 | 420 | 16 | 405 | 13 | 5 | 38.4615 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m1_e0 | * | 96.6092 | 95.6522 | 97.5855 | 92.5754 | 484 | 22 | 485 | 12 | 2 | 16.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6089 | 93.9727 | 99.3973 | 31.2378 | 8731 | 560 | 8741 | 53 | 52 | 98.1132 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6089 | 93.9727 | 99.3973 | 31.2378 | 8731 | 560 | 8741 | 53 | 52 | 98.1132 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6080 | 98.5287 | 94.7608 | 90.7066 | 2076 | 31 | 2080 | 115 | 11 | 9.5652 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.6075 | 95.2464 | 98.0080 | 54.6884 | 16831 | 840 | 16827 | 342 | 333 | 97.3684 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.6075 | 95.2464 | 98.0080 | 54.6884 | 16831 | 840 | 16827 | 342 | 333 | 97.3684 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | het | 96.6071 | 94.5804 | 98.7226 | 91.3140 | 541 | 31 | 541 | 7 | 3 | 42.8571 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6063 | 94.2548 | 99.0780 | 47.3389 | 2789 | 170 | 2794 | 26 | 6 | 23.0769 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.6054 | 94.5304 | 98.7736 | 51.8161 | 3301 | 191 | 3302 | 41 | 34 | 82.9268 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | * | 96.6054 | 96.6926 | 96.5184 | 90.3545 | 497 | 17 | 499 | 18 | 2 | 11.1111 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.6052 | 94.2754 | 99.0530 | 53.1678 | 3656 | 222 | 3661 | 35 | 17 | 48.5714 | |
| astatham-gatk | INDEL | * | map_l150_m2_e0 | * | 96.6049 | 95.8807 | 97.3400 | 91.1929 | 1350 | 58 | 1354 | 37 | 7 | 18.9189 | |
| dgrover-gatk | INDEL | I6_15 | * | hetalt | 96.6039 | 93.4744 | 99.9502 | 38.7907 | 7993 | 558 | 8034 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.6037 | 94.0559 | 99.2933 | 56.1920 | 269 | 17 | 281 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | homalt | 96.6035 | 99.0803 | 94.2476 | 38.7254 | 7326 | 68 | 7340 | 448 | 160 | 35.7143 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6034 | 93.7599 | 99.6247 | 26.3649 | 7663 | 510 | 7699 | 29 | 29 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6029 | 93.5337 | 99.8803 | 39.4384 | 3298 | 228 | 3339 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6029 | 93.5337 | 99.8803 | 39.4384 | 3298 | 228 | 3339 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | het | 96.6024 | 96.1802 | 97.0283 | 84.1962 | 982 | 39 | 1404 | 43 | 23 | 53.4884 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6016 | 96.7192 | 96.4844 | 63.4807 | 737 | 25 | 741 | 27 | 4 | 14.8148 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | homalt | 96.6009 | 94.9670 | 98.2921 | 70.2641 | 1151 | 61 | 1151 | 20 | 15 | 75.0000 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | * | 96.6006 | 100.0000 | 93.4247 | 83.0940 | 4 | 0 | 341 | 24 | 11 | 45.8333 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6005 | 95.5255 | 97.6999 | 63.9558 | 918 | 43 | 892 | 21 | 10 | 47.6190 | |
| dgrover-gatk | SNP | tv | map_l250_m0_e0 | het | 96.5998 | 96.8531 | 96.3478 | 94.1784 | 554 | 18 | 554 | 21 | 2 | 9.5238 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | het | 96.5995 | 94.3218 | 98.9899 | 84.6986 | 299 | 18 | 294 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5990 | 94.8298 | 98.4355 | 90.5728 | 752 | 41 | 755 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5986 | 97.2603 | 95.9459 | 94.3164 | 71 | 2 | 71 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 54.5455 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 59.4595 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| jlack-gatk | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 52.8302 | 71 | 1 | 71 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5969 | 93.7477 | 99.6247 | 26.3674 | 7662 | 511 | 7698 | 29 | 29 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5961 | 94.5946 | 98.6842 | 87.1622 | 70 | 4 | 75 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5955 | 94.8520 | 98.4043 | 89.8378 | 737 | 40 | 740 | 12 | 1 | 8.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.5955 | 95.4157 | 97.8049 | 67.5959 | 5578 | 268 | 5525 | 124 | 115 | 92.7419 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.5955 | 95.4157 | 97.8049 | 67.5959 | 5578 | 268 | 5525 | 124 | 115 | 92.7419 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | * | 96.5943 | 95.5684 | 97.6424 | 93.2903 | 496 | 23 | 497 | 12 | 2 | 16.6667 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | * | 96.5938 | 96.2264 | 96.9641 | 66.5839 | 1581 | 62 | 1565 | 49 | 36 | 73.4694 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | * | 96.5933 | 96.8989 | 96.2897 | 89.3425 | 2156 | 69 | 2154 | 83 | 14 | 16.8675 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5928 | 93.5112 | 99.8845 | 36.3837 | 1542 | 107 | 1729 | 2 | 2 | 100.0000 | |