PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23101-23150 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6815 | 93.6024 | 99.9702 | 26.8790 | 6657 | 455 | 6701 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | * | 96.6812 | 97.1951 | 96.1726 | 74.8216 | 48097 | 1388 | 47642 | 1896 | 159 | 8.3861 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6802 | 96.8254 | 96.5354 | 62.6690 | 610 | 20 | 613 | 22 | 7 | 31.8182 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.6800 | 98.3871 | 95.0311 | 92.5047 | 305 | 5 | 306 | 16 | 2 | 12.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.6794 | 95.3401 | 98.0570 | 84.9425 | 757 | 37 | 757 | 15 | 9 | 60.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | het | 96.6790 | 99.4207 | 94.0844 | 84.2276 | 7894 | 46 | 7666 | 482 | 11 | 2.2822 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6789 | 94.2328 | 99.2552 | 26.5783 | 4379 | 268 | 4398 | 33 | 30 | 90.9091 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.6785 | 95.6573 | 97.7218 | 80.9284 | 815 | 37 | 815 | 19 | 14 | 73.6842 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.6774 | 93.5685 | 100.0000 | 26.2024 | 1804 | 124 | 1918 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | het | 96.6769 | 93.8198 | 99.7135 | 80.2936 | 4873 | 321 | 4873 | 14 | 4 | 28.5714 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | * | 96.6767 | 93.5673 | 100.0000 | 90.7736 | 160 | 11 | 161 | 0 | 0 | ||
| ckim-dragen | INDEL | * | HG002compoundhet | het | 96.6766 | 98.1925 | 95.2069 | 77.0708 | 4020 | 74 | 3774 | 190 | 179 | 94.2105 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6759 | 93.5657 | 100.0000 | 27.8543 | 4348 | 299 | 4398 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6757 | 94.4354 | 99.0249 | 47.4574 | 4056 | 239 | 4062 | 40 | 13 | 32.5000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6754 | 93.6402 | 99.9140 | 32.5015 | 1119 | 76 | 1162 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | het | 96.6744 | 97.6540 | 95.7143 | 93.1170 | 333 | 8 | 335 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.6741 | 93.5622 | 100.0000 | 75.4425 | 218 | 15 | 222 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6740 | 93.5880 | 99.9704 | 27.5688 | 6714 | 460 | 6758 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6737 | 94.1848 | 99.2978 | 59.9146 | 7920 | 489 | 7919 | 56 | 51 | 91.0714 | |
| qzeng-custom | INDEL | * | segdup | * | 96.6734 | 97.6526 | 95.7138 | 94.7770 | 2496 | 60 | 2568 | 115 | 34 | 29.5652 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | * | 96.6732 | 95.7364 | 97.6285 | 88.1886 | 247 | 11 | 247 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | * | 96.6727 | 96.2651 | 97.0838 | 86.5742 | 799 | 31 | 799 | 24 | 6 | 25.0000 | |
| ckim-isaac | INDEL | * | segdup | * | 96.6725 | 94.9531 | 98.4553 | 92.8290 | 2427 | 129 | 2422 | 38 | 23 | 60.5263 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | hetalt | 96.6724 | 93.6886 | 99.8525 | 38.6610 | 1811 | 122 | 2031 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6722 | 93.9296 | 99.5798 | 30.8791 | 8727 | 564 | 8769 | 37 | 37 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6722 | 93.9296 | 99.5798 | 30.8791 | 8727 | 564 | 8769 | 37 | 37 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6703 | 94.6112 | 98.8210 | 55.5926 | 3687 | 210 | 3688 | 44 | 37 | 84.0909 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | * | 96.6693 | 97.1855 | 96.1585 | 74.8078 | 47583 | 1378 | 47134 | 1883 | 157 | 8.3378 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | homalt | 96.6684 | 96.6984 | 96.6384 | 45.8931 | 13004 | 444 | 12649 | 440 | 434 | 98.6364 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.6684 | 95.5791 | 97.7828 | 72.0972 | 4778 | 221 | 4763 | 108 | 70 | 64.8148 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.6684 | 95.5791 | 97.7828 | 72.0972 | 4778 | 221 | 4763 | 108 | 70 | 64.8148 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.6681 | 94.0715 | 99.4120 | 57.9684 | 14503 | 914 | 14541 | 86 | 84 | 97.6744 | |
| egarrison-hhga | INDEL | I6_15 | * | * | 96.6680 | 95.4155 | 97.9538 | 47.3697 | 23685 | 1138 | 23696 | 495 | 388 | 78.3838 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | * | 96.6680 | 96.8395 | 96.4971 | 78.8652 | 31192 | 1018 | 31184 | 1132 | 247 | 21.8198 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | het | 96.6680 | 94.1558 | 99.3179 | 76.7302 | 725 | 45 | 728 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002compoundhet | * | 96.6675 | 94.0758 | 99.4060 | 64.7187 | 11624 | 732 | 11547 | 69 | 52 | 75.3623 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.6667 | 93.5484 | 100.0000 | 82.3171 | 58 | 4 | 58 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | hetalt | 96.6667 | 93.5484 | 100.0000 | 63.7500 | 29 | 2 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | het | 96.6667 | 96.6667 | 96.6667 | 88.9908 | 58 | 2 | 58 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6667 | 93.5484 | 100.0000 | 39.7183 | 203 | 14 | 214 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | SNP | ti | map_l100_m1_e0 | hetalt | 96.6667 | 100.0000 | 93.5484 | 82.7778 | 29 | 0 | 29 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.6667 | 93.5484 | 100.0000 | 84.0970 | 58 | 4 | 59 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |