PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22801-22850 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 84.9057 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 86.9919 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 87.5969 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.7742 | 93.7500 | 100.0000 | 91.7127 | 15 | 1 | 15 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 91.8919 | 15 | 1 | 15 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | het | 96.7742 | 94.6215 | 99.0271 | 92.2359 | 1425 | 81 | 1425 | 14 | 5 | 35.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.8495 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0888 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 36.0000 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 84.0796 | 30 | 0 | 30 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7742 | 93.7500 | 100.0000 | 79.7297 | 15 | 1 | 15 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 84.0000 | 15 | 1 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.7742 | 93.7500 | 100.0000 | 74.2015 | 105 | 7 | 105 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 85.3760 | 105 | 7 | 105 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.4455 | 45 | 3 | 46 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 92.9515 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7742 | 93.7500 | 100.0000 | 80.7692 | 15 | 1 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.9747 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.3603 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 95.1621 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.2000 | 15 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8510 | 15 | 1 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 96.7742 | 93.7500 | 100.0000 | 99.8973 | 15 | 1 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 91.2381 | 45 | 3 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.7742 | 93.7500 | 100.0000 | 95.5840 | 30 | 2 | 31 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 96.7742 | 95.7447 | 97.8261 | 95.1426 | 45 | 2 | 45 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1889 | 45 | 3 | 46 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8571 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 85.5856 | 15 | 1 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0370 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.9564 | 15 | 1 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8134 | 15 | 1 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | het | 96.7742 | 93.7500 | 100.0000 | 86.1751 | 60 | 4 | 60 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | het | 96.7733 | 99.1851 | 94.4760 | 80.5468 | 10467 | 86 | 10467 | 612 | 94 | 15.3595 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 96.7731 | 93.7729 | 99.9716 | 58.2211 | 10481 | 696 | 10542 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7729 | 93.7900 | 99.9519 | 33.6738 | 2054 | 136 | 2077 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7729 | 96.8794 | 96.6667 | 75.3175 | 1366 | 44 | 1334 | 46 | 39 | 84.7826 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.7722 | 94.3320 | 99.3421 | 47.8261 | 233 | 14 | 453 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7712 | 99.6205 | 94.0803 | 83.0466 | 525 | 2 | 445 | 28 | 26 | 92.8571 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7712 | 99.6205 | 94.0803 | 83.0466 | 525 | 2 | 445 | 28 | 26 | 92.8571 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7707 | 96.6667 | 96.8750 | 65.8120 | 319 | 11 | 310 | 10 | 3 | 30.0000 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | * | 96.7706 | 94.9266 | 98.6878 | 59.5666 | 28440 | 1520 | 28503 | 379 | 309 | 81.5303 | |