PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22401-22450 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | ti | HG002compoundhet | het | 96.8798 | 94.0768 | 99.8549 | 38.2659 | 8942 | 563 | 8944 | 13 | 3 | 23.0769 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | * | 96.8796 | 97.3349 | 96.4286 | 86.1120 | 840 | 23 | 837 | 31 | 4 | 12.9032 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.8792 | 96.0199 | 97.7540 | 64.3266 | 579 | 24 | 914 | 21 | 15 | 71.4286 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8787 | 94.0922 | 99.8354 | 35.2518 | 2389 | 150 | 2426 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | * | 96.8785 | 96.4404 | 97.3206 | 91.1117 | 2032 | 75 | 2034 | 56 | 8 | 14.2857 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8780 | 94.3944 | 99.4959 | 25.6896 | 6500 | 386 | 6513 | 33 | 33 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | * | 96.8780 | 97.2952 | 96.4644 | 75.8291 | 16043 | 446 | 16043 | 588 | 214 | 36.3946 | |
| ndellapenna-hhga | SNP | ti | map_l250_m0_e0 | het | 96.8767 | 94.6467 | 99.2144 | 92.7117 | 884 | 50 | 884 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002compoundhet | hetalt | 96.8755 | 94.0503 | 99.8757 | 63.2515 | 10512 | 665 | 10446 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 82.3529 | 31 | 2 | 30 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 87.3494 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.4560 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.7716 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 80.5139 | 93 | 6 | 91 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 78.1022 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.5195 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.8917 | 31 | 2 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8750 | 96.8750 | 96.8750 | 84.6154 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 61.9048 | 31 | 2 | 32 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | hetalt | 96.8750 | 100.0000 | 93.9394 | 83.9024 | 31 | 0 | 31 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.4209 | 31 | 2 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.1538 | 93 | 6 | 93 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 63.6364 | 31 | 2 | 32 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 86.4035 | 31 | 2 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.9377 | 31 | 2 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 88.2576 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 85.8447 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.1369 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.6000 | 31 | 2 | 31 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.4667 | 31 | 2 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.6267 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.3819 | 93 | 6 | 94 | 0 | 0 | ||
| astatham-gatk | SNP | tv | tech_badpromoters | het | 96.8750 | 93.9394 | 100.0000 | 55.7143 | 31 | 2 | 31 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8750 | 96.8750 | 96.8750 | 86.3636 | 372 | 12 | 372 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.2088 | 31 | 2 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.7273 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 75.7180 | 93 | 6 | 93 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.8750 | 100.0000 | 93.9394 | 65.3240 | 188 | 0 | 186 | 12 | 12 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.4472 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 74.0223 | 93 | 6 | 93 | 0 | 0 | ||
| ckim-dragen | SNP | tv | tech_badpromoters | het | 96.8750 | 93.9394 | 100.0000 | 35.4167 | 31 | 2 | 31 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 75.7180 | 93 | 6 | 93 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.8968 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.8750 | 93.9737 | 99.9612 | 23.5381 | 2573 | 165 | 2575 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | segdup | * | 96.8734 | 95.8115 | 97.9592 | 92.6811 | 183 | 8 | 192 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 96.8730 | 96.4368 | 97.3131 | 86.4514 | 839 | 31 | 833 | 23 | 6 | 26.0870 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | het | 96.8725 | 96.2617 | 97.4910 | 56.0860 | 824 | 32 | 816 | 21 | 15 | 71.4286 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8719 | 95.3757 | 98.4158 | 90.8249 | 495 | 24 | 497 | 8 | 2 | 25.0000 | |